Improved silencing properties using small internally segmented interfering RNAs

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  • Jesper B Bramsen
  • Maria B Laursen
  • Christian K Damgaard
  • Suzy Willsen Lena, RiboTask ApS, Denmark
  • Bolle Ravindra Babu, Nucleic Acid Center, Department of Physics and Chemistry, University of Southern Denmark, Denmark
  • Jesper Wengel, Nucleic Acid Center, Department of Physics and Chemistry, University of Southern Denmark, Denmark
  • Jørgen Kjems
RNA interference is mediated by small interfering RNAs (siRNAs) that upon incorporation into the RNA-induced silencing complex (RISC) can target complementary mRNA for degradation. Standard siRNA design usually feature a 19-27 base pair contiguous double-stranded region that is believed to be important for RISC incorporation. Here, we describe a novel siRNA design composed of an intact antisense strand complemented with two shorter 10-12 nt sense strands. This three-stranded construct, termed small internally segmented interfering RNA (sisiRNA), is highly functional demonstrating that an intact sense strand is not a prerequisite for RNA interference. Moreover, when using the sisiRNA design only the antisense strand is functional in activated RISC thereby completely eliminating unintended mRNA targeting by the sense strand. Interestingly, the sisiRNA design supports the function of chemically modified antisense strands, which are non-functional within the context of standard siRNA designs. This suggests that the sisiRNA design has a clear potential of improving the pharmacokinetic properties of siRNA in vivo.
Original languageEnglish
JournalNucleic Acids Research
Volume35
Issue17
Pages (from-to)5886-5897
Number of pages12
ISSN0305-1048
DOIs
Publication statusPublished - 2007

    Research areas

  • Cell Line, Tumor, Humans, Oligonucleotides, Oligonucleotides, Antisense, RNA Interference, RNA, Guide, RNA, Small Interfering

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