How high-throughput sequencing empowers the research of polyploidy in vegetable crops

Weixuan Du; Xiaoning Wang; Xiaokun Zhao; Yun Pei; Lei Xia; Qinzheng Zhao; Chunyan Cheng; Yuhui Wang; Ji Li; Chuntao Qian; Qunfeng Lou; Rong Zhou; Carl-Otto Ottosen; Jinfeng Chen; Xiaqing Yu

doi:10.48130/vegres-0024-0005

How high-throughput sequencing empowers the research of polyploidy in vegetable crops

Weixuan Du, Xiaoning Wang, Xiaokun Zhao, Yun Pei, Lei Xia, Qinzheng Zhao, Chunyan Cheng, Yuhui Wang, Ji Li, Chuntao Qian, Qunfeng Lou, Rong Zhou, Carl-Otto Ottosen, Jinfeng Chen, Xiaqing Yu

Department of Food Science - Plant, Food & Climate

Research output: Contribution to journal/Conference contribution in journal/Contribution to newspaper › Review › Research › peer-review

1 Citation (Scopus)

Abstract

Vegetables are not only economically important, but also essential for a healthy human diet providing fiber, minerals and essential nutrients. All flowering plants, including many vegetable crops, are polyploids, pinpointing the significance of polyploidy in plant evolution and crop breeding. In the last two decades, the fast development of sequencing has facilitated genome wide investigation of genetic and epigenetic changes that has occurred during the polyploidization process. With the achievement of more and more high-quality plant genomes, ancient polyploidization (also known as whole genome duplication, WGD) events have frequently been seen, which is vital for the understanding of domestication and differentiation history of vegetables. Moreover, advanced joint analysis of multi-omics data has been applied for efficient elucidation of underlying molecular mechanisms of complex traits in vegetables. This paper summarizes the status for the research on vegetable polyploids facilitated by high-throughput sequencing, that improve the understanding of plant evolution and support effective vegetable breeding via polyploidy.

Original language	English
Article number	e006
Journal	Vegetable Research
Volume	4
Issue	4
ISSN	2769-0520
DOIs	https://doi.org/10.48130/vegres-0024-0005
Publication status	Published - 1 Feb 2024

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title = "How high-throughput sequencing empowers the research of polyploidy in vegetable crops",

abstract = "Vegetables are not only economically important, but also essential for a healthy human diet providing fiber, minerals and essential nutrients. All flowering plants, including many vegetable crops, are polyploids, pinpointing the significance of polyploidy in plant evolution and crop breeding. In the last two decades, the fast development of sequencing has facilitated genome wide investigation of genetic and epigenetic changes that has occurred during the polyploidization process. With the achievement of more and more high-quality plant genomes, ancient polyploidization (also known as whole genome duplication, WGD) events have frequently been seen, which is vital for the understanding of domestication and differentiation history of vegetables. Moreover, advanced joint analysis of multi-omics data has been applied for efficient elucidation of underlying molecular mechanisms of complex traits in vegetables. This paper summarizes the status for the research on vegetable polyploids facilitated by high-throughput sequencing, that improve the understanding of plant evolution and support effective vegetable breeding via polyploidy.",

author = "Weixuan Du and Xiaoning Wang and Xiaokun Zhao and Yun Pei and Lei Xia and Qinzheng Zhao and Chunyan Cheng and Yuhui Wang and Ji Li and Chuntao Qian and Qunfeng Lou and Rong Zhou and Carl-Otto Ottosen and Jinfeng Chen and Xiaqing Yu",

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AU - Du, Weixuan

AU - Wang, Xiaoning

AU - Zhao, Xiaokun

AU - Pei, Yun

AU - Xia, Lei

AU - Zhao, Qinzheng

AU - Cheng, Chunyan

AU - Wang, Yuhui

AU - Li, Ji

AU - Qian, Chuntao

AU - Lou, Qunfeng

AU - Zhou, Rong

AU - Ottosen, Carl-Otto

AU - Chen, Jinfeng

AU - Yu, Xiaqing

PY - 2024/2/1

Y1 - 2024/2/1

N2 - Vegetables are not only economically important, but also essential for a healthy human diet providing fiber, minerals and essential nutrients. All flowering plants, including many vegetable crops, are polyploids, pinpointing the significance of polyploidy in plant evolution and crop breeding. In the last two decades, the fast development of sequencing has facilitated genome wide investigation of genetic and epigenetic changes that has occurred during the polyploidization process. With the achievement of more and more high-quality plant genomes, ancient polyploidization (also known as whole genome duplication, WGD) events have frequently been seen, which is vital for the understanding of domestication and differentiation history of vegetables. Moreover, advanced joint analysis of multi-omics data has been applied for efficient elucidation of underlying molecular mechanisms of complex traits in vegetables. This paper summarizes the status for the research on vegetable polyploids facilitated by high-throughput sequencing, that improve the understanding of plant evolution and support effective vegetable breeding via polyploidy.

AB - Vegetables are not only economically important, but also essential for a healthy human diet providing fiber, minerals and essential nutrients. All flowering plants, including many vegetable crops, are polyploids, pinpointing the significance of polyploidy in plant evolution and crop breeding. In the last two decades, the fast development of sequencing has facilitated genome wide investigation of genetic and epigenetic changes that has occurred during the polyploidization process. With the achievement of more and more high-quality plant genomes, ancient polyploidization (also known as whole genome duplication, WGD) events have frequently been seen, which is vital for the understanding of domestication and differentiation history of vegetables. Moreover, advanced joint analysis of multi-omics data has been applied for efficient elucidation of underlying molecular mechanisms of complex traits in vegetables. This paper summarizes the status for the research on vegetable polyploids facilitated by high-throughput sequencing, that improve the understanding of plant evolution and support effective vegetable breeding via polyploidy.

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IS - 4

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ER -

How high-throughput sequencing empowers the research of polyploidy in vegetable crops

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