Aarhus University Seal / Aarhus Universitets segl

Geographical contrasts of Y-chromosomal haplogroups from wild and domestic goats reveal ancient migrations and recent introgressions

Research output: Contribution to journal/Conference contribution in journal/Contribution to newspaperJournal articleResearchpeer-review

DOI

  • Var Goats Consortium, http://www.goatgenome.org/vargoats.html
  • ,
  • Isaäc J Nijman, Univ Utrecht, Utrecht University, Social & Org Psychol
  • ,
  • Benjamin D Rosen, Biosciences Research Laboratory, U.S. Department of Agriculture, Agricultural Research Service
  • ,
  • Philippe Bardou, INRAE, GenPhySE
  • ,
  • Thomas Faraut, INRAE, GenPhySE
  • ,
  • Tristan Cumer, Univ Grenoble Alpes, Communaute Universite Grenoble Alpes, Universite Grenoble Alpes (UGA), Inst Environm Geosci
  • ,
  • Kevin G Daly, Trinity Coll Dublin, Trinity College Dublin, Trinity Translat Med Inst
  • ,
  • Zhuqing Zheng, College of Animal Science and Technology
  • ,
  • Yudong Cai, College of Animal Science and Technology
  • ,
  • Hojjat Asadollahpour, College of Animal Science and Technology
  • ,
  • Bengi Çınar Kul, Makerere University, Faculty of Veterinary Medicine
  • ,
  • Wei-Yi Zhang, Southwest Univ, Southwest University - China, Coll Resources & Environm
  • ,
  • E Guangxin, Southwest Univ, Southwest University - China, Coll Resources & Environm
  • ,
  • A Ayin, Kobe Univ, Kobe University, Grad Sch Human Dev & Environm
  • ,
  • Hayley Baird, AgResearch, AgResearch - New Zealand, Lincoln Res Ctr, Food & Biobased Prod
  • ,
  • Meirat Bakhtin, Astana Medical Univ.
  • ,
  • Valentin A Bâlteanu, Inst. of Life SciencesUniv. Agricultural Sciences and Veterinary Medicine of Cluj-Napoca
  • ,
  • Diana Barfield, Pleystole
  • ,
  • Beate Berger, Univ. Natural Resources and Life Sciences Vienna (BOKU)
  • ,
  • Thor Blichfeldt, Norwegian Association of Sheep and Goat Breeders
  • ,
  • Geert Boink, Stichting Zeldzame Huisdierrassen, Wageningen, The Netherlands.
  • ,
  • Sri R A Bugiwati, Hasanuddin Univ, Universitas Hasanuddin, Dept Marine Sci
  • ,
  • Zexi Cai
  • Sean Carolan, The Old Irish Goat Society, Mulranny, Co Mayo, Ireland.
  • ,
  • Emily Clark, Univ Edinburgh, University of Edinburgh, Royal Observ Edinburgh, Inst Astron
  • ,
  • Vlatka Cubric-Curik, Univ Hosp Ctr Zagreb, University of Zagreb, Div Gastroenterol & Hepatol
  • ,
  • Muhammad I A Dagong, Hasanuddin Univ, Universitas Hasanuddin, Dept Marine Sci
  • ,
  • Tashi Dorji, International Centre for Integrated Mountain Development Nepal
  • ,
  • Louise Drew, Finch Hatton
  • ,
  • Jiazhong Guo, Sichuan Agr Univ, Sichuan Agricultural University, Triticeae Res Inst
  • ,
  • Jón Hallsson, Agricultural Univ. Iceland
  • ,
  • Simon Horvat, Univ Ljubljana, University of Ljubljana, Dept Psychol
  • ,
  • Juha Kantanen, Nat Resources Inst Finland Luke, Natural Resources Institute Finland (Luke), Milk Prod
  • ,
  • Fuki Kawaguchi, Kobe Univ, Kobe University, Grad Sch Human Dev & Environm
  • ,
  • Polat Kazymbet, Astana Medical Univ.
  • ,
  • Negar Khayatzadeh, Univ. Natural Resources and Life Sciences Vienna (BOKU)
  • ,
  • Namshin Kim, Korea Research Institute of Bioscience and Biotechnology (KRIBB)
  • ,
  • Manoj Kumar Shah, University of Copenhagen
  • ,
  • Yuying Liao, Guangxi Key Laboratory of Livestock Genetic Improvement
  • ,
  • Amparo Martínez, Univ Cordoba, Universidad de Cordoba, Fac Vet, Dept Anim Prod
  • ,
  • Joseph S Masangkay, Univ Philippines, University of the Philippines System, University of the Philippines Diliman, Marine Sci Inst CS
  • ,
  • Maho Masaoka, Kobe Univ, Kobe University, Grad Sch Human Dev & Environm
  • ,
  • Raffaele Mazza, Laboratorio Genetica e Servizi
  • ,
  • John McEwan, AgResearch, AgResearch - New Zealand, Lincoln Res Ctr, Food & Biobased Prod
  • ,
  • Marco Milanesi, Univ. degli studi della Tuscia
  • ,
  • Md Omar Faruque, Bangladesh Agricultural Univ.
  • ,
  • Yuto Nomura, Kobe Univ, Kobe University, Grad Sch Human Dev & Environm
  • ,
  • Nadjet-Amina Ouchene-Khelifi, University of Blida
  • ,
  • Filipe Pereira, IDENTIFICA Genetic Testing Maia & Centre for Functional Ecology
  • ,
  • Goutam Sahana
  • Mazdak Salavati, Univ Edinburgh, University of Edinburgh, Royal Observ Edinburgh, Inst Astron
  • ,
  • Shinji Sasazaki, Kobe Univ, Kobe University, Grad Sch Human Dev & Environm
  • ,
  • Anne Da Silva, Univ. Limoges
  • ,
  • Mojca Simčič, Univ Ljubljana, University of Ljubljana, Dept Psychol
  • ,
  • Johann Sölkner, Univ. Natural Resources and Life Sciences Vienna (BOKU)
  • ,
  • Alison Sutherland, New Zealand Arapawa Goat Association
  • ,
  • Johannes Tigchelaar, Stichting Zeldzame Huisdierrassen, Wageningen, The Netherlands.
  • ,
  • Hongpin Zhang, Sichuan Agr Univ, Sichuan Agricultural University, Triticeae Res Inst
  • ,
  • Econogene Consortium
  • ,
  • Paolo Ajmone-Marsan, Univ. Cattolica del S. Cuore di Piacenza and BioDNA Biodiversity and Ancient DNA Res. Centre
  • ,
  • Daniel G Bradley, Trinity Coll Dublin, Trinity College Dublin, Trinity Translat Med Inst
  • ,
  • Licia Colli, Univ. Cattolica del S. Cuore di Piacenza and BioDNA Biodiversity and Ancient DNA Res. Centre
  • ,
  • Cord Drögemüller, Univ Bern, University of Bern, Univ Hosp Psychiat, Div Syst Neurosci Psychopathol, Translat Res Ctr
  • ,
  • Yu Jiang, College of Animal Science and Technology
  • ,
  • Chuzhao Lei, College of Animal Science and Technology
  • ,
  • Hideyuki Mannen, Kobe Univ, Kobe University, Grad Sch Human Dev & Environm
  • ,
  • François Pompanon, Univ Grenoble Alpes, Communaute Universite Grenoble Alpes, Universite Grenoble Alpes (UGA), Inst Environm Geosci
  • ,
  • Gwenola Tosser-Klopp, INRAE, GenPhySE
  • ,
  • Johannes A Lenstra, Univ Utrecht, Utrecht University, Social & Org Psychol

By their paternal transmission, Y-chromosomal haplotypes are sensitive markers of population history and male-mediated introgression. Previous studies identified biallelic single-nucleotide variants in the SRY, ZFY, DDX3Y genes, which in domestic goats identified four major Y-chromosomal haplotypes Y1A, Y1B, Y2A and Y2B with a marked geographic partitioning. Here, we extracted goat Y-chromosomal variants from whole-genome sequences of 386 domestic goats (75 breeds) and 7 wild goat species, which were generated by the VarGoats goat genome project. Phylogenetic analyses indicated domestic haplogroups corresponding to Y1B, Y2A and Y2B, respectively, whereas Y1A is split into Y1AA and Y1AB. All five haplogroups were detected in 26 ancient DNA samples from southeast Europe or Asia. Haplotypes from present-day bezoars are not shared with domestic goats and are attached to deep nodes of the trees and networks. Haplogroup distributions for 186 domestic breeds indicate ancient paternal population bottlenecks and expansions during the migrations into northern Europe, eastern and southern Asia and Africa south of the Sahara. In addition, sharing of haplogroups indicates male-mediated introgressions, most notably an early gene flow from Asian goats into Madagascar and the crossbreeding that in the 19th century resulted in the popular Boer and Anglo-Nubian breeds. More recent introgressions are those from European goats into the native Korean goat population and from Boer goat into Uganda, Kenya, Tanzania, Malawi and Zimbabwe. This study illustrates the power of the Y-chromosomal variants for reconstructing the history of domestic species with a wide geographic range.

Original languageEnglish
JournalMolecular Ecology
ISSN0962-1083
DOIs
Publication statusE-pub ahead of print - 25 Jun 2022

Bibliographical note

This article is protected by copyright. All rights reserved.

See relations at Aarhus University Citationformats

ID: 273064674