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Comprehensive Identification and Analyses of the Hsf Gene Family in the Whole-genome of Three Apiaceae Species

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Comprehensive Identification and Analyses of the Hsf Gene Family in the Whole-genome of Three Apiaceae Species. / Pei, Qiaoying ; Yu, Tong; Wu, Tong et al.

In: Horticultural Plant Journal, Vol. 7, No. 5, 09.2021, p. 457-468.

Research output: Contribution to journal/Conference contribution in journal/Contribution to newspaperJournal articleResearchpeer-review

Harvard

Pei, Q, Yu, T, Wu, T, Yang, Q, Gong, K, Zhou, R, Cui, C, Yu, Y, Zhao, W, Kang, X, Cao, R & Song, X 2021, 'Comprehensive Identification and Analyses of the Hsf Gene Family in the Whole-genome of Three Apiaceae Species', Horticultural Plant Journal, vol. 7, no. 5, pp. 457-468. https://doi.org/10.1016/j.hpj.2020.08.005

APA

Pei, Q., Yu, T., Wu, T., Yang, Q., Gong, K., Zhou, R., Cui, C., Yu, Y., Zhao, W., Kang, X., Cao, R., & Song, X. (2021). Comprehensive Identification and Analyses of the Hsf Gene Family in the Whole-genome of Three Apiaceae Species. Horticultural Plant Journal, 7(5), 457-468. https://doi.org/10.1016/j.hpj.2020.08.005

CBE

Pei Q, Yu T, Wu T, Yang Q, Gong K, Zhou R, Cui C, Yu Y, Zhao W, Kang X, et al. 2021. Comprehensive Identification and Analyses of the Hsf Gene Family in the Whole-genome of Three Apiaceae Species. Horticultural Plant Journal. 7(5):457-468. https://doi.org/10.1016/j.hpj.2020.08.005

MLA

Vancouver

Pei Q, Yu T, Wu T, Yang Q, Gong K, Zhou R et al. Comprehensive Identification and Analyses of the Hsf Gene Family in the Whole-genome of Three Apiaceae Species. Horticultural Plant Journal. 2021 Sep;7(5):457-468. Epub 2020 Aug. doi: 10.1016/j.hpj.2020.08.005

Author

Pei, Qiaoying ; Yu, Tong ; Wu, Tong et al. / Comprehensive Identification and Analyses of the Hsf Gene Family in the Whole-genome of Three Apiaceae Species. In: Horticultural Plant Journal. 2021 ; Vol. 7, No. 5. pp. 457-468.

Bibtex

@article{5cc710fcc4234620b7c1d77d99a61f6e,
title = "Comprehensive Identification and Analyses of the Hsf Gene Family in the Whole-genome of Three Apiaceae Species",
abstract = "Apiaceae is a major family from Apiales and includes many important vegetable and medicinal crops. Heat shock transcription factors (Hsf) play important roles in heat tolerance during plant development. Here, we conducted systematic analyses of the Hsf gene family in three Apiaceae species, including 17 Apium graveolens (celery), 32 Coriandrum sativum (coriander), and 14 Daucus carota (carrot). A total of 73 Hsf genes were identified in three representative species, including Arabidopsis thaliana, Vitis vinifera, and Lactuca sativa. Whole-genome duplication played important roles in the Hsf gene family's expansion within Apiaceae. Interestingly, we found that coriander had more Hsf genes than celery and carrot due to greater expansion and fewer losses. Twenty-seven branches of the phylogenetic tree underwent considerable positive selection in these Apiaceae species. We also explored the expression patterns of Hsf genes in three plant organs. Collectively, this study will serve as a rich gene resource for exploring the molecular mechanisms of heat tolerance. Additionally, this is the first study to report on the Hsf gene family in Apiaceae; thus, our research will provide guidance for future comparative and functional genomic studies on the Hsf gene family and others in Apiaceae.",
keywords = "Hsf gene family, Gene duplication and loss, Expression pattern, Apiaceae",
author = "Qiaoying Pei and Tong Yu and Tong Wu and Qihang Yang and Ke Gong and Rong Zhou and Chunlin Cui and Ying Yu and Wei Zhao and Xi Kang and Rui Cao and Xiaoming Song",
year = "2021",
month = sep,
doi = "10.1016/j.hpj.2020.08.005",
language = "English",
volume = "7",
pages = "457--468",
journal = "Horticultural Plant Journal",
issn = "2468-0141",
publisher = "Elsevier",
number = "5",

}

RIS

TY - JOUR

T1 - Comprehensive Identification and Analyses of the Hsf Gene Family in the Whole-genome of Three Apiaceae Species

AU - Pei, Qiaoying

AU - Yu, Tong

AU - Wu, Tong

AU - Yang, Qihang

AU - Gong, Ke

AU - Zhou, Rong

AU - Cui, Chunlin

AU - Yu, Ying

AU - Zhao, Wei

AU - Kang, Xi

AU - Cao, Rui

AU - Song, Xiaoming

PY - 2021/9

Y1 - 2021/9

N2 - Apiaceae is a major family from Apiales and includes many important vegetable and medicinal crops. Heat shock transcription factors (Hsf) play important roles in heat tolerance during plant development. Here, we conducted systematic analyses of the Hsf gene family in three Apiaceae species, including 17 Apium graveolens (celery), 32 Coriandrum sativum (coriander), and 14 Daucus carota (carrot). A total of 73 Hsf genes were identified in three representative species, including Arabidopsis thaliana, Vitis vinifera, and Lactuca sativa. Whole-genome duplication played important roles in the Hsf gene family's expansion within Apiaceae. Interestingly, we found that coriander had more Hsf genes than celery and carrot due to greater expansion and fewer losses. Twenty-seven branches of the phylogenetic tree underwent considerable positive selection in these Apiaceae species. We also explored the expression patterns of Hsf genes in three plant organs. Collectively, this study will serve as a rich gene resource for exploring the molecular mechanisms of heat tolerance. Additionally, this is the first study to report on the Hsf gene family in Apiaceae; thus, our research will provide guidance for future comparative and functional genomic studies on the Hsf gene family and others in Apiaceae.

AB - Apiaceae is a major family from Apiales and includes many important vegetable and medicinal crops. Heat shock transcription factors (Hsf) play important roles in heat tolerance during plant development. Here, we conducted systematic analyses of the Hsf gene family in three Apiaceae species, including 17 Apium graveolens (celery), 32 Coriandrum sativum (coriander), and 14 Daucus carota (carrot). A total of 73 Hsf genes were identified in three representative species, including Arabidopsis thaliana, Vitis vinifera, and Lactuca sativa. Whole-genome duplication played important roles in the Hsf gene family's expansion within Apiaceae. Interestingly, we found that coriander had more Hsf genes than celery and carrot due to greater expansion and fewer losses. Twenty-seven branches of the phylogenetic tree underwent considerable positive selection in these Apiaceae species. We also explored the expression patterns of Hsf genes in three plant organs. Collectively, this study will serve as a rich gene resource for exploring the molecular mechanisms of heat tolerance. Additionally, this is the first study to report on the Hsf gene family in Apiaceae; thus, our research will provide guidance for future comparative and functional genomic studies on the Hsf gene family and others in Apiaceae.

KW - Hsf gene family

KW - Gene duplication and loss

KW - Expression pattern

KW - Apiaceae

U2 - 10.1016/j.hpj.2020.08.005

DO - 10.1016/j.hpj.2020.08.005

M3 - Journal article

VL - 7

SP - 457

EP - 468

JO - Horticultural Plant Journal

JF - Horticultural Plant Journal

SN - 2468-0141

IS - 5

ER -