Eutrophication of lakes often results in dominance of cyanobacteria, which may potentially lead to serious blooms and toxic water. However, cyanobacterial detritus may act as an important carbon source for aquatic organisms. Using stable isotope carbon (13C) as a tracer, we assessed the carbon transfer from cyanobacteria to pelagic and benthic consumers in a 28-day outdoor mesocosm (~130 L) labelling experiment established in Lake Taihu, China, during a Microcystis aeruginosa bloom. The different organisms were labelled differently after addition of the labelled Microcystis detritus to the water. δ¹³C of particulate organic matter and of cladoceran zooplankton peaked earlier than for larger invertebrate consumers. Among the pelagic species, Daphnia similis had the highest Δδ¹³C, while the two snail species Radix swinhoei and Bellamya aeruginosa had lower but similar Δδ¹³C. The bivalves showed relatively modest changes in δ¹³C. The δ¹³C of Anodonta woodiana and Unio douglasiae showed a marginal though not significant increase, while a marked increase occurred for Arconaia lanceolate peaking on day 20, and Corbicula fluminea a slight increase peaking on day 9. Our results suggest that carbon from cyanobacteria can be incorporated by pelagic and some benthic consumers and eventually be transferred to higher trophic levels. Cyanobacterial carbon may, therefore, be considered an important carbon source supporting the entire food web during blooms, even if the cyanobacteria are not consumed directly.