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A genome and gene catalog of glacier microbiomes

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  • Yongqin Liu, Lanzhou University, Chinese Academy of Sciences, University of Chinese Academy of Sciences
  • ,
  • Mukan Ji, Lanzhou University
  • ,
  • Tao Yu, University of Chinese Academy of Sciences, CAS - Institute of Microbiology
  • ,
  • Julian Zaugg, University of Queensland
  • ,
  • Alexandre M. Anesio
  • Zhihao Zhang, Chinese Academy of Sciences, University of Chinese Academy of Sciences
  • ,
  • Songnian Hu, University of Chinese Academy of Sciences, CAS - Institute of Microbiology
  • ,
  • Philip Hugenholtz, University of Queensland
  • ,
  • Keshao Liu, Chinese Academy of Sciences
  • ,
  • Pengfei Liu, Lanzhou University
  • ,
  • Yuying Chen, Chinese Academy of Sciences, University of Chinese Academy of Sciences
  • ,
  • Yingfeng Luo, University of Chinese Academy of Sciences, CAS - Institute of Microbiology
  • ,
  • Tandong Yao, Chinese Academy of Sciences

Glaciers represent a unique inventory of microbial genetic diversity and a record of evolution. The Tibetan Plateau contains the largest area of low-latitude glaciers and is particularly vulnerable to global warming. By sequencing 85 metagenomes and 883 cultured isolates from 21 Tibetan glaciers covering snow, ice and cryoconite habitats, we present a specialized glacier microbial genome and gene catalog to archive glacial genomic and functional diversity. This comprehensive Tibetan Glacier Genome and Gene (TG2G) catalog includes 883 genomes and 2,358 metagenome-assembled genomes, which represent 968 candidate species spanning 30 phyla. The catalog also contains over 25 million non-redundant protein-encoding genes, the utility of which is demonstrated by the exploration of secondary metabolite biosynthetic potentials, virulence factor identification and global glacier metagenome comparison. The TG2G catalog is a valuable resource that enables enhanced understanding of the structure and functions of Tibetan glacial microbiomes.

Original languageEnglish
JournalNature Biotechnology
Volume40
Issue9
Pages (from-to)1341-1348
Number of pages8
ISSN1087-0156
DOIs
Publication statusPublished - Sep 2022

Bibliographical note

Funding Information:
This study was supported by the Second Tibetan Plateau Scientific Expedition and Research Program (STEP) 2019QZKK0503 (Y. Liu and K.L.) and 2021QZKK0100 (P.L., Y. Luo and T. Yu); the National Key Research and Development Plans 2019YFC1509103 (Y. Liu) and 2021YFC2300904 (M.J.); and the Major Research Plan of the National Natural Science Foundation of China 91851207 (Y. Liu and Y.C.).

Publisher Copyright:
© 2022, The Author(s), under exclusive licence to Springer Nature America, Inc.

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