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Zexi Cai

Segregation of the structural variant responds for mastitis resistance in re-sequencing Nordic Holstein animals

Research output: Contribution to book/anthology/report/proceeding › Article in proceedings › Research › peer-review

Standard

Segregation of the structural variant responds for mastitis resistance in re-sequencing Nordic Holstein animals. / Cai, Zexi; Sahana, Goutam.
WCGALP 2022 Programme book. Wageningen Academic Publishers, 2022.

Research output: Contribution to book/anthology/report/proceeding › Article in proceedings › Research › peer-review

Harvard

Cai, Z & Sahana, G 2022, Segregation of the structural variant responds for mastitis resistance in re-sequencing Nordic Holstein animals. in WCGALP 2022 Programme book. Wageningen Academic Publishers, World Congress on Genetics Applied to Livestock Production, Rotterdam, Netherlands, 03/07/2022. <https://www.wageningenacademic.com/pb-assets/wagen/WCGALP2022/28_004.pdf>

APA

Cai, Z., & Sahana, G. (2022). Segregation of the structural variant responds for mastitis resistance in re-sequencing Nordic Holstein animals. In WCGALP 2022 Programme book Wageningen Academic Publishers. https://www.wageningenacademic.com/pb-assets/wagen/WCGALP2022/28_004.pdf

CBE

Cai Z, Sahana G. 2022. Segregation of the structural variant responds for mastitis resistance in re-sequencing Nordic Holstein animals. In WCGALP 2022 Programme book. Wageningen Academic Publishers.

MLA

Cai, Zexi and Goutam Sahana "Segregation of the structural variant responds for mastitis resistance in re-sequencing Nordic Holstein animals". WCGALP 2022 Programme book. Wageningen Academic Publishers. 2022.

Vancouver

Cai Z, Sahana G. Segregation of the structural variant responds for mastitis resistance in re-sequencing Nordic Holstein animals. In WCGALP 2022 Programme book. Wageningen Academic Publishers. 2022

Author

Cai, Zexi ; Sahana, Goutam. / Segregation of the structural variant responds for mastitis resistance in re-sequencing Nordic Holstein animals. WCGALP 2022 Programme book. Wageningen Academic Publishers, 2022.

Bibtex

@inproceedings{5feee5616e204624a8a0101dcc0b1694,
title = "Segregation of the structural variant responds for mastitis resistance in re-sequencing Nordic Holstein animals",
abstract = "An important source of genome sequence variations, structural variants (SVs), are largely ignored due to the difficulty to precisely calling these variants. In this study, we used whole genome sequence (WGS) data to capture the SVs in various breeds. We have identified 84,561 SVs in 567 WGS animals. When compared the called SVs with the major quantitative trait locus for mastitis resistance on chromosome 6 near to GC gene, we found a duplication (DUP) is highly similar to previous reported copy number variant. Even though the linkage disequilibrium between the lead SNP for mastitis resistance and the called DUP is not complete, the SVs profile we obtained still showed the potential for identifying functional variants.",
author = "Zexi Cai and Goutam Sahana",
year = "2022",
month = jul,
language = "English",
booktitle = "WCGALP 2022 Programme book",
publisher = "Wageningen Academic Publishers",
note = "World Congress on Genetics Applied to Livestock Production ; Conference date: 03-07-2022 Through 08-07-2022",
url = "https://wcgalp.com/",

}

RIS

TY - GEN

T1 - Segregation of the structural variant responds for mastitis resistance in re-sequencing Nordic Holstein animals

AU - Cai, Zexi

AU - Sahana, Goutam

N1 - Conference code: 12

PY - 2022/7

Y1 - 2022/7

N2 - An important source of genome sequence variations, structural variants (SVs), are largely ignored due to the difficulty to precisely calling these variants. In this study, we used whole genome sequence (WGS) data to capture the SVs in various breeds. We have identified 84,561 SVs in 567 WGS animals. When compared the called SVs with the major quantitative trait locus for mastitis resistance on chromosome 6 near to GC gene, we found a duplication (DUP) is highly similar to previous reported copy number variant. Even though the linkage disequilibrium between the lead SNP for mastitis resistance and the called DUP is not complete, the SVs profile we obtained still showed the potential for identifying functional variants.

AB - An important source of genome sequence variations, structural variants (SVs), are largely ignored due to the difficulty to precisely calling these variants. In this study, we used whole genome sequence (WGS) data to capture the SVs in various breeds. We have identified 84,561 SVs in 567 WGS animals. When compared the called SVs with the major quantitative trait locus for mastitis resistance on chromosome 6 near to GC gene, we found a duplication (DUP) is highly similar to previous reported copy number variant. Even though the linkage disequilibrium between the lead SNP for mastitis resistance and the called DUP is not complete, the SVs profile we obtained still showed the potential for identifying functional variants.

M3 - Article in proceedings

BT - WCGALP 2022 Programme book

PB - Wageningen Academic Publishers

T2 - World Congress on Genetics Applied to Livestock Production

Y2 - 3 July 2022 through 8 July 2022

ER -