Center for Quantitative Genetics and Genomics

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Zexi Cai

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  1. 2023
  2. Published

    Long-Term Simulation of Microgravity Induces Changes in Gene Expression in Breast Cancer Cells. / Sahana, Jayashree; Cortés-Sánchez, José Luis; Sandt, Viviann et al.

    In: International Journal of Molecular Sciences , Vol. 24, No. 2, 07.01.2023.

    Research output: Contribution to journal/Conference contribution in journal/Contribution to newspaper › Journal article › Research › peer-review

  3. 2022
  4. Published

    Application of mixed linear models for the estimation of functional effects on bovine stature based on SNP summary statistics from a whole-genome association study. / Kotlarz, Krzysztof; Kosinska-Selbi, Barbara; Cai, Zexi et al.

    In: Genetics Selection Evolution, Vol. 54, 80, 12.2022.

    Research output: Contribution to journal/Conference contribution in journal/Contribution to newspaper › Journal article › Research › peer-review

  5. Published

    Large-scale association study on daily weight gain in pigs reveals overlap of genetic factors for growth in humans. / Cai, Zexi; Christensen, Ole Fredslund; Lund, Mogens Sandø et al.

    In: BMC Genomics, Vol. 23, 133, 12.2022.

    Research output: Contribution to journal/Conference contribution in journal/Contribution to newspaper › Journal article › Research › peer-review

  6. Published

    Geographical contrasts of Y-chromosomal haplogroups from wild and domestic goats reveal ancient migrations and recent introgressions. / Consortium, Var Goats; Nijman, Isaäc J; Rosen, Benjamin D et al.

    In: Molecular Ecology, Vol. 31, No. 16, 08.2022, p. 4364-4380.

    Research output: Contribution to journal/Conference contribution in journal/Contribution to newspaper › Journal article › Research › peer-review

  7. Published

    Accuracy of genomic prediction of dry matter intake in Dutch Holsteins using sequence variants from meta-analyses. / Gredler-Grandl, Birgit; Raymond, B.; Schopen, G.C.B. et al.

    WCGALP 2022 Programme book. Wageningen Academic Publishers, 2022.

    Research output: Contribution to book/anthology/report/proceeding › Article in proceedings › Research › peer-review

  8. Published

    Fine-mapping young-stock survival QTL on chromosome 6 in Nordic Red Dairy Cattle. / Cai, Zexi; Wu, Xiaoping; Thomsen, Bo et al.

    WCGALP 2022 Programme book. Wageningen Academic Publishers, 2022.

    Research output: Contribution to book/anthology/report/proceeding › Article in proceedings › Research › peer-review

  9. Published

    Genomic prediction with incomplete omics data. / Karaman, Emre; Milkevych, Viktor; Cai, Zexi et al.

    WCGALP 2022 Programme book. Wageningen Academic Publishers, 2022.

    Research output: Contribution to book/anthology/report/proceeding › Article in proceedings › Research › peer-review

  10. Published

    Quantitative trait simulation using MeSCoT software. / Milkevych, Viktor; Karaman, Emre; Sahana, Goutam et al.

    WCGALP 2022 Programme book. Wageningen Academic Publishers, 2022.

    Research output: Contribution to book/anthology/report/proceeding › Article in proceedings › Research › peer-review

  11. Published

    Segregation of the structural variant responds for mastitis resistance in re-sequencing Nordic Holstein animals. / Cai, Zexi; Sahana, Goutam.

    WCGALP 2022 Programme book. Wageningen Academic Publishers, 2022.

    Research output: Contribution to book/anthology/report/proceeding › Article in proceedings › Research › peer-review

  12. Published

    The application of mixed linear models for the estimation of functional effects on bovine stature based on SNP summary. / Kotlarz, Krzysztof ; Kosinska-Selbi, Barbara; Cai, Zexi et al.

    WCGALP 2022 Programme book. Wageningen Academic Publishers, 2022.

    Research output: Contribution to book/anthology/report/proceeding › Article in proceedings › Research › peer-review

  13. 2021
  14. Published

    Pig genome functional annotation enhances the biological interpretation of complex traits and human disease. / Pan, Zhangyuan; Yao, Yuelin; Yin, Hongwei et al.

    In: Nature Communications, Vol. 12, No. 1, 5848, 12.2021.

    Research output: Contribution to journal/Conference contribution in journal/Contribution to newspaper › Journal article › Research › peer-review

  15. Published

    MeSCoT : The tool for quantitative trait simulation through the mechanistic modeling of genes' regulatory interactions. / Milkevych, Viktor; Karaman, Emre; Sahana, Goutam et al.

    In: G3 (Bethesda, Md.), Vol. 11, No. 7, jkab133, 07.2021.

    Research output: Contribution to journal/Conference contribution in journal/Contribution to newspaper › Journal article › Research › peer-review

  16. Published

    Transcriptomics analysis of differentially expressed genes in subcutaneous and perirenal adipose tissue of sheep as affected by their pre- and early postnatal malnutrition histories. / Ahmad, Sharmila; Drag, Markus Hodal; Salleh, Suraya Mohamad et al.

    In: BMC Genomics, Vol. 22, 338, 05.2021.

    Research output: Contribution to journal/Conference contribution in journal/Contribution to newspaper › Journal article › Research › peer-review

  17. 2020
  18. Published

    Inclusion of endophenotypes in a standard GWAS facilitate a detailed mechanistic understanding of genetic elements that control blood lipid levels. / Zhang, Qianqian; Cai, Zexi; Lhomme, Marie et al.

    In: Scientific Reports, Vol. 10, No. 1, 18434, 12.2020.

    Research output: Contribution to journal/Conference contribution in journal/Contribution to newspaper › Journal article › Research › peer-review

  19. Published

    Genomic diversity revealed by whole-genome sequencing in three Danish commercial pig breeds. / Cai, Zexi; Sarup, Pernille; Ostersen, Tage et al.

    In: Journal of Animal Science, Vol. 98, No. 7, 229, 07.2020.

    Research output: Contribution to journal/Conference contribution in journal/Contribution to newspaper › Journal article › Research › peer-review

  20. Published

    Integrated Karyotypes of Diploid and Tetraploid Carrizo Citrange (Citrus sinensis L. Osbeck × Poncirus trifoliata L. Raf.) as Determined by Sequential Multicolor Fluorescence in situ Hybridization With Tandemly Repeated DNA Sequences. / Deng, Honghong; Tang, Guohao ; Xu, Nuo et al.

    In: Frontiers in Plant Science, Vol. 11, 569, 05.2020.

    Research output: Contribution to journal/Conference contribution in journal/Contribution to newspaper › Journal article › Research › peer-review

  21. Published

    Molecular evidence for adaptive evolution of olfactory-related genes in cervids. / Ba, Hengxing; Qin, Tao; Cai, Zexi et al.

    In: Genes and Genomics, Vol. 42, No. 4, 04.2020, p. 355-360.

    Research output: Contribution to journal/Conference contribution in journal/Contribution to newspaper › Journal article › Research › peer-review

  22. Published

    Evolution and domestication footprints uncovered from the genomes of coix. / Liu, Hongbing; Shi, Junpeng; Cai, Zexi et al.

    In: Molecular Plant, Vol. 13, No. 2, 03.02.2020, p. 295-308.

    Research output: Contribution to journal/Conference contribution in journal/Contribution to newspaper › Journal article › Research › peer-review

  23. Published

    Chromosome-level genome assembly of Tarim red deer, Cervus elaphus yarkandensis. / Ba, Hengxing; Cai, Zexi; Gao, Haoyang et al.

    In: Scientific Data, Vol. 7, 187, 2020.

    Research output: Contribution to journal/Conference contribution in journal/Contribution to newspaper › Journal article › Research › peer-review

  24. Published

    Distinguishing pleiotropy from linked QTL between milk production traits and mastitis resistance in Nordic Holstein cattle. / Cai, Zexi; Dusza, Magdalena; Guldbrandtsen, Bernt et al.

    In: Genetics, selection, evolution : GSE, Vol. 52, No. 1, 19, 2020.

    Research output: Contribution to journal/Conference contribution in journal/Contribution to newspaper › Journal article › Research › peer-review

  25. 2019
  26. Published

    Whole genome sequence and de novo assembly revealed genomic architecture of Indian Mithun (Bos frontalis). / Mukherjee, Sabyasachi; Cai, Zexi; Mukherjee, Anupama et al.

    In: BMC Genomics, Vol. 20, No. 1, 617, 29.07.2019.

    Research output: Contribution to journal/Conference contribution in journal/Contribution to newspaper › Journal article › Research › peer-review

  27. Published

    ChIP-cloning analysis uncovers centromere-specific retrotransposons in Brassica nigra and reveals their rapid diversification in Brassica allotetraploids. / Wang, Gui-Xiang; He, Qun-Yan; Zhao, Hong et al.

    In: Chromosoma, Vol. 128, No. 2, 06.2019, p. 119-131.

    Research output: Contribution to journal/Conference contribution in journal/Contribution to newspaper › Journal article › Research › peer-review

  28. Published

    Weighting sequence variants based on their annotation increases the power of genome-wide association studies in dairy cattle. / Cai, Zexi; Guldbrandtsen, Bernt; Lund, Mogens Sandø et al.

    In: Genetics Selection Evolution, Vol. 51, No. 1, 20, 10.05.2019, p. 20.

    Research output: Contribution to journal/Conference contribution in journal/Contribution to newspaper › Journal article › Research › peer-review

  29. Published

    Comparative karyotype analysis among six Ipomoea species based on two newly identified repetitive sequences. / Sun, Jianying; Yu, Lixuan; Cai, Zexi et al.

    In: Genome, Vol. 62, No. 4, 04.2019, p. 243-252.

    Research output: Contribution to journal/Conference contribution in journal/Contribution to newspaper › Journal article › Research › peer-review

  30. Published

    Prioritizing candidate genes for fertility in dairy cows using gene-based analysis, functional annotation and differential gene expression. / Cai, Zexi; Guldbrandtsen, Bernt; Lund, Mogens Sandø et al.

    In: BMC Genomics, Vol. 20, 255, 29.03.2019.

    Research output: Contribution to journal/Conference contribution in journal/Contribution to newspaper › Journal article › Research › peer-review

  31. Published

    Karyotype Analysis of Diploid and Spontaneously Occurring Tetraploid Blood Orange [Citrus sinensis (L.) Osbeck] Using Multicolor FISH With Repetitive DNA Sequences as Probes. / Deng, Honghong; Cai, Zexi; Xiang, Suqiong et al.

    In: Frontiers in Plant Science, Vol. 10, No. 331, 22.03.2019.

    Research output: Contribution to journal/Conference contribution in journal/Contribution to newspaper › Journal article › Research › peer-review

  32. Published

    Molecular cytogenetic analysis of genome-specific repetitive elements in Citrus clementina Hort. Ex Tan. and its taxonomic implications. / Deng, Honghong; Xiang, Suqiong; Guo, Qigao et al.

    In: BMC Plant Biology, Vol. 19, No. 1, 15.02.2019, p. 77.

    Research output: Contribution to journal/Conference contribution in journal/Contribution to newspaper › Journal article › Research › peer-review

  33. Published

    Dissecting closely linked association signals in combination with the mammalian phenotype database can identify candidate genes in dairy cattle. / Cai, Zexi; Guldbrandtsen, Bernt; Lund, Mogens Sandø et al.

    In: BMC Genetics, Vol. 20, 15, 29.01.2019.

    Research output: Contribution to journal/Conference contribution in journal/Contribution to newspaper › Journal article › Research › peer-review

  34. 2018
  35. Published

    Retraction Note : Dissecting closely linked association signals in combination with the mammalian phenotype database can identify candidate genes in dairy cattle ( Reference: BMC Genetics (2018) 19:30 DOI: 10.1186/s12863-018-0620-0). / Cai, Zexi; Guldbrandtsen, Bernt; Lund, Mogens Sandø et al.

    In: BMC Genetics, Vol. 19, No. 1, 111, 11.12.2018.

    Research output: Contribution to journal/Conference contribution in journal/Contribution to newspaper › Comment/debate/letter to the editor › Research › peer-review

  36. Published

    SNP markers associated with body size and pelt length in American mink (Neovison vison). / Cai, Zexi; Villumsen, Trine Michelle; Asp, Torben et al.

    In: BMC Genetics, Vol. 19, No. 1, 103, 12.11.2018.

    Research output: Contribution to journal/Conference contribution in journal/Contribution to newspaper › Journal article › Research › peer-review

  37. Published

    Prioritizing candidate genes post-GWAS using multiple sources of data for mastitis resistance in dairy cattle. / Cai, Zexi; Guldbrandtsen, Bernt; Lund, Mogens Sandø et al.

    In: BMC Genomics, Vol. 19, No. 1, 656, 06.09.2018.

    Research output: Contribution to journal/Conference contribution in journal/Contribution to newspaper › Journal article › Research › peer-review

  38. Published

    Genomic selection in mink yield higher accuracies with a Bayesian approach allowing for heterogeneous variance than a GBLUP model. / Villumsen, Trine Michelle; Su, Guosheng; Cai, Zexi et al.

    Proceedings of the World Congress on Genetics Applied to Livestock Production, 2018: Volume Methods and Tools - Prediction 2. 2018. 11.618.

    Research output: Contribution to book/anthology/report/proceeding › Article in proceedings › Research › peer-review

  39. Published

    Genomics using the Assembly of the Mink Genome. / Guldbrandtsen, Bernt; Cai, Zexi; Sahana, Goutam et al.

    Proceedings of the World Congress on Genetics Applied to Livestock Production, 2018: Volume Electronic Poster Session - Molecular Genetics 1. 2018. 539.

    Research output: Contribution to book/anthology/report/proceeding › Article in proceedings › Research › peer-review

  40. 2017
  41. Published

    Bayes AS and GBLUP models for genomic selection in mink. / Villumsen, Trine Michelle; Su, Guosheng; Cai, Zexi et al.

    2017. Poster session presented at 5th Annual GenSAP Meeting, 15-16 November 2017, Billund, Denmark.

    Research output: Contribution to conference › Poster › Research

  42. Published

    The first draft reference genome of the American mink (Neovison vison). / Cai, Zexi; Petersen, Bent; Sahana, Goutam et al.

    In: Scientific Reports, Vol. 7, No. 1, 14564, 06.11.2017.

    Research output: Contribution to journal/Conference contribution in journal/Contribution to newspaper › Journal article › Research › peer-review

  43. Published

    Gener i kortlagte genområder påvirker størrelse, kvalitet og reproduktion. / Villumsen, Trine Michelle; Cai, Zexi; Sahana, Goutam et al.

    Temadag om aktuel minkforskning. ed. / Steen H. Møller; Jens Malmkvist. Vol. 103 Tjele : DCA - Nationalt Center for Fødevarer og Jordbrug, 2017. p. 32-40 (DCA rapport).

    Research output: Contribution to book/anthology/report/proceeding › Report chapter › Research

  44. 2016
  45. Published

    The draft genome sequence of the American mink (Neovison vison) opens new opportunities of genomic research in mink. / Cai, Zexi; Panitz, Frank; Petersen, Bent et al.

    Proceedings of the XIth International Scientific Congress in Fur Animal Production. 2016. p. 131-136.

    Research output: Contribution to book/anthology/report/proceeding › Article in proceedings › Research

  46. 2015
  47. Published

    Repetitive sequence analysis and karyotyping reveals centromere-associated DNA sequences in radish (Raphanus sativus L.). / He, Qunyan; Cai, Zexi; Hu, Tianhua et al.

    In: B M C Plant Biology, Vol. 15, No. 105, 2015, p. 1-12.

    Research output: Contribution to journal/Conference contribution in journal/Contribution to newspaper › Journal article › Research › peer-review

  48. 2014
  49. Published

    Differential genome evolution and speciation of Coix lacryma-jobi L. and Coix aquatica Roxb. hybrid guangxi revealed by repetitive sequence analysis and fine karyotyping. / Cai, Zexi; Liu, Huijun; He, Qunyan et al.

    In: B M C Genomics, Vol. 15, 2014, p. 1025.

    Research output: Contribution to journal/Conference contribution in journal/Contribution to newspaper › Journal article › Research › peer-review

  50. 2013
  51. Published

    Research Advances in Coix L. Biology. / Cai, Zexi; Liu, Huijun; Xie, Wenjun et al.

    In: Field Crops Research, Vol. 2, 2013, p. 6-6.

    Research output: Contribution to journal/Conference contribution in journal/Contribution to newspaper › Journal article › Research › peer-review

  52. 2012
  53. Published

    Organization, function and genetic controlling of synaptonemal complex. / Xie, WJ; Shi, DY; Cai, ZX et al.

    In: Hereditas (Beijing), Vol. 34, No. 2, 2012, p. 167-176.

    Research output: Contribution to journal/Conference contribution in journal/Contribution to newspaper › Journal article › Research › peer-review