20222025

Research activity per year

Search results

  • 2025

    PCA-based spatial domain identification with state-of-the-art performance

    Schaub, D. P., Yousefi, B., Kaiser, N., Khatri, R., Puelles, V. G., Krebs, C. F., Panzer, U. & Bonn, S., Jan 2025, In: Bioinformatics. 41, 1, btaf005.

    Research output: Contribution to journal/Conference contribution in journal/Contribution to newspaperJournal articleResearchpeer-review

    Open Access
  • 2024

    Apoptotic cell identity induces distinct functional responses to IL-4 in efferocytic macrophages

    Liebold, I., Jawazneh, A. A., Casar, C., Lanzloth, C., Leyk, S., Hamley, M., Wong, M. N., Kylies, D., Gräfe, S. K., Edenhofer, I., Aranda-Pardos, I., Kriwet, M., Haas, H., Krause, J., Hadjilaou, A., Schromm, A. B., Richardt, U., Eggert, P., Tappe, D. & Weidemann, S. A. & 11 others, Ghosh, S., Krebs, C. F., A-Gonzalez, N., Worthmann, A., Lohse, A. W., Huber, S., Rothlin, C. V., Puelles, V. G., Jacobs, T., Gagliani, N. & Bosurgi, L., 5 Apr 2024, In: Science. 384, 6691, eabo7027.

    Research output: Contribution to journal/Conference contribution in journal/Contribution to newspaperJournal articleResearchpeer-review

    14 Citations (Scopus)
  • Attenuated kidney oxidative metabolism in young adults with type 1 diabetes

    Choi, Y. J., Richard, G., Zhang, G., Hodgin, J. B., Demeke, D. S., Yang, Y., Schaub, J. A., Tamayo, I. M., Gurung, B. K., Naik, A. S., Nair, V., Birznieks, C., MacDonald, A., Narongkiatikhun, P., Gross, S., Driscoll, L., Flynn, M., Tommerdahl, K., Nadeau, K. J. & Shah, V. N. & 26 others, Vigers, T., Snell-Bergeon, J. K., Kendrick, J., van Raalte, D. H., Li, L. P., Prasad, P., Ladd, P., Chin, B. B., Cherney, D. Z., McCown, P. J., Alakwaa, F., Otto, E. A., Brosius, F. C., Saulnier, P. J., Puelles, V. G., Goodrich, J. A., Street, K., Venkatachalam, M. A., Ruiz, A., de Boer, I. H., Nelson, R. G., Pyle, L., Blondin, D. P., Sharma, K., Kretzler, M. & Bjornstad, P., Dec 2024, In: Journal of Clinical Investigation. 134, 24, e183984.

    Research output: Contribution to journal/Conference contribution in journal/Contribution to newspaperJournal articleResearchpeer-review

    Open Access
    2 Citations (Scopus)
  • Cyclin-dependent kinase 4 drives cystic kidney disease in the absence of mTORC1 signaling activity

    Grahammer, F., Dumoulin, B., Gulieva, R. E., Wu, H., Xu, Y., Sulaimanov, N., Arnold, F., Sandner, L., Cordts, T., Todkar, A., Moulin, P., Reichardt, W., Puelles, V. G., Kramann, R., Freedman, B. S., Busch, H., Boerries, M., Walz, G. & Huber, T. B., Nov 2024, In: Kidney International. 106, 5, p. 856-869 14 p.

    Research output: Contribution to journal/Conference contribution in journal/Contribution to newspaperJournal articleResearchpeer-review

  • Gene count estimation with pytximport enables reproducible analysis of bulk RNA sequencing data in Python

    Kuehl, M., Wong, M. N., Wanner, N., Bonn, S. & Puelles, V. G., 1 Dec 2024, In: Bioinformatics. 40, 12, btae700.

    Research output: Contribution to journal/Conference contribution in journal/Contribution to newspaperJournal articleResearchpeer-review

    Open Access
  • Ibrutinib-associated focal segmental glomerulosclerosis and the impact of podocin mutations in chronic lymphocytic leukemia

    Czogalla, J., Schliffke, S., Lu, S., Schwerk, M., Petereit, H., Zhang, T., Liu, S., Dumoulin, B., Gies, S., Wu, G., Hänzelmann, S., Bode, M., Grahammer, F., Gödel, M., Voigtländer, M., Butt, L., Bokemeyer, C., Bergmann, C., Benzing, T. & Wiech, T. & 2 others, Puelles, V. G. & Huber, T. B., Apr 2024, In: Kidney International. 105, 4, p. 877-881 5 p.

    Research output: Contribution to journal/Conference contribution in journal/Contribution to newspaperLetterpeer-review

    Open Access
    1 Citation (Scopus)
  • Optimized protocol for the multiomics processing of cryopreserved human kidney tissue

    Gies, S. E., Hänzelmann, S., Kylies, D., Lassé, M., Lagies, S., Hausmann, F., Khatri, R., Zolotarev, N., Poets, M., Zhang, T., Demir, F., Billing, A. M., Quaas, J., Meister, E., Engesser, J., Mühlig, A. K., Lu, S., Liu, S., Chilla, S. & Edenhofer, I. & 8 others, Czogalla, J., Braun, F., Kammerer, B., Puelles, V. G., Bonn, S., Rinschen, M. M., Lindenmeyer, M. & Huber, T. B., Nov 2024, In: American Journal of Physiology - Renal Physiology. 327, 5, p. F822-F844

    Research output: Contribution to journal/Conference contribution in journal/Contribution to newspaperJournal articleResearchpeer-review

    Open Access
  • Persistence of spike protein at the skull-meninges-brain axis may contribute to the neurological sequelae of COVID-19

    Rong, Z., Mai, H., Ebert, G., Kapoor, S., Puelles, V. G., Czogalla, J., Hu, S., Su, J., Prtvar, D., Singh, I., Schädler, J., Delbridge, C., Steinke, H., Frenzel, H., Schmidt, K., Braun, C., Bruch, G., Ruf, V., Ali, M. & Sühs, K. W. & 28 others, Nemati, M., Hopfner, F., Ulukaya, S., Jeridi, D., Mistretta, D., Caliskan, Ö. S., Wettengel, J. M., Cherif, F., Kolabas, Z. I., Molbay, M., Horvath, I., Zhao, S., Krahmer, N., Yildirim, A. Ö., Ussar, S., Herms, J., Huber, T. B., Tahirovic, S., Schwarzmaier, S. M., Plesnila, N., Höglinger, G., Ondruschka, B., Bechmann, I., Protzer, U., Elsner, M., Bhatia, H. S., Hellal, F. & Ertürk, A., 11 Dec 2024, In: Cell Host and Microbe. 32, 12, p. 2112-2130.e10

    Research output: Contribution to journal/Conference contribution in journal/Contribution to newspaperJournal articleResearchpeer-review

    Open Access
    6 Citations (Scopus)
  • 2023

    Accumulation of α-synuclein mediates podocyte injury in Fabry nephropathy

    Braun, F., Abed, A., Sellung, D., Rogg, M., Woidy, M., Eikrem, O., Wanner, N., Gambardella, J., Laufer, S. D., Haas, F., Wong, M. N., Dumoulin, B., Rischke, P., Mühlig, A., Sachs, W., von Cossel, K., Schulz, K., Muschol, N., Gersting, S. W. & Muntau, A. C. & 18 others, Kretz, O., Hahn, O., Rinschen, M. M., Mauer, M., Bork, T., Grahammer, F., Liang, W., Eierhoff, T., Römer, W., Hansen, A., Meyer-Schwesinger, C., Iaccarino, G., Tøndel, C., Marti, H. P., Najafian, B., Puelles, V. G., Schell, C. & Huber, T. B., Jun 2023, In: The Journal of clinical investigation. 133, 11, e157782.

    Research output: Contribution to journal/Conference contribution in journal/Contribution to newspaperJournal articleResearchpeer-review

    Open Access
    26 Citations (Scopus)
  • An integrated organoid omics map extends modeling potential of kidney disease

    Lassé, M., El Saghir, J., Berthier, C. C., Eddy, S., Fischer, M., Laufer, S. D., Kylies, D., Hutzfeldt, A., Bonin, L. L., Dumoulin, B., Menon, R., Vega-Warner, V., Eichinger, F., Alakwaa, F., Fermin, D., Billing, A. M., Minakawa, A., McCown, P. J., Rose, M. P. & Godfrey, B. & 20 others, Meister, E., Wiech, T., Noriega, M., Chrysopoulou, M., Brandts, P., Ju, W., Reinhard, L., Hoxha, E., Grahammer, F., Lindenmeyer, M. T., Huber, T. B., Schlüter, H., Thiel, S., Mariani, L. H., Puelles, V. G., Braun, F., Kretzler, M., Demir, F., Harder, J. L. & Rinschen, M. M., Dec 2023, In: Nature Communications. 14, 1, 21 p., 4903.

    Research output: Contribution to journal/Conference contribution in journal/Contribution to newspaperJournal articleResearchpeer-review

    Open Access
    10 Citations (Scopus)
  • Distinct molecular profiles of skull bone marrow in health and neurological disorders

    Kolabas, Z. I., Kuemmerle, L. B., Perneczky, R., Förstera, B., Ulukaya, S., Ali, M., Kapoor, S., Bartos, L. M., Büttner, M., Caliskan, O. S., Rong, Z., Mai, H., Höher, L., Jeridi, D., Molbay, M., Khalin, I., Deligiannis, I. K., Negwer, M., Roberts, K. & Simats, A. & 65 others, Carofiglio, O., Todorov, M. I., Horvath, I., Ozturk, F., Hummel, S., Biechele, G., Zatcepin, A., Unterrainer, M., Gnörich, J., Roodselaar, J., Shrouder, J., Khosravani, P., Tast, B., Richter, L., Díaz-Marugán, L., Kaltenecker, D., Lux, L., Chen, Y., Zhao, S., Rauchmann, B. S., Sterr, M., Kunze, I., Stanic, K., Kan, V. W. Y., Besson-Girard, S., Katzdobler, S., Palleis, C., Schädler, J., Paetzold, J. C., Liebscher, S., Hauser, A. E., Gokce, O., Lickert, H., Steinke, H., Benakis, C., Braun, C., Martinez-Jimenez, C. P., Buerger, K., Albert, N. L., Höglinger, G., Levin, J., Haass, C., Kopczak, A., Dichgans, M., Havla, J., Kümpfel, T., Kerschensteiner, M., Schifferer, M., Simons, M., Liesz, A., Krahmer, N., Bayraktar, O. A., Franzmeier, N., Plesnila, N., Erener, S., Puelles, V. G., Delbridge, C., Bhatia, H. S., Hellal, F., Elsner, M., Bechmann, I., Ondruschka, B., Brendel, M., Theis, F. J. & Erturk, A., Aug 2023, In: Cell. 186, 17, p. 3706-3725.e29 20 p.

    Research output: Contribution to journal/Conference contribution in journal/Contribution to newspaperJournal articleResearchpeer-review

    Open Access
    File
    61 Citations (Scopus)
    4 Downloads (Pure)
  • Expansion-enhanced super-resolution radial fluctuations enable nanoscale molecular profiling of pathology specimens

    Kylies, D., Zimmermann, M., Haas, F., Schwerk, M., Kuehl, M., Brehler, M., Czogalla, J., Hernandez, L. C., Konczalla, L., Okabayashi, Y., Menzel, J., Edenhofer, I., Mezher, S., Aypek, H., Dumoulin, B., Wu, H., Hofmann, S., Kretz, O., Wanner, N. & Tomas, N. M. & 17 others, Krasemann, S., Glatzel, M., Kuppe, C., Kramann, R., Banjanin, B., Schneider, R. K., Urbschat, C., Arck, P., Gagliani, N., van Zandvoort, M., Wiech, T., Grahammer, F., Sáez, P. J., Wong, M. N., Bonn, S., Huber, T. B. & Puelles, V. G., Apr 2023, In: Nature Nanotechnology. 18, 4, p. 336-342 7 p.

    Research output: Contribution to journal/Conference contribution in journal/Contribution to newspaperJournal articleResearchpeer-review

    Open Access
    File
    16 Citations (Scopus)
    10 Downloads (Pure)
  • HLA-DP on Epithelial Cells Enables Tissue Damage by NKp44+ Natural Killer Cells in Ulcerative Colitis

    Baumdick, M. E., Niehrs, A., Degenhardt, F., Schwerk, M., Hinrichs, O., Jordan-Paiz, A., Padoan, B., Wegner, L. H. M., Schloer, S., Zecher, B. F., Malsy, J., Joshi, V. R., Illig, C., Schröder-Schwarz, J., Möller, K. J., Akar, A., Flemming, C., Felix, Flomm & Flosbach, M. & 32 others, Jäger, J., Jeromin, N., Jung, J., Ohms, M., Reinshagen, K., Rische, J., Sagebiel, A., Sandfort, D., Steinert, F., Tomuschat, C., Wesche, J., Martin, M. P., Yuki, Y., Ozawa, M., Sauter, J., Schmidt, A. H., Perez, D., Giannou, A. D., Carrington, M., Davis, R. S., Schumacher, U., Sauter, G., Huber, S., Puelles, V. G., Melling, N., Franke, A., Shifteh Abedian, A., Andersen, V., Müller, C., Wang, K., Hamburg Intestinal Tissue Study Group & International Inflammatory Bowel Disease Genetics Consortium, Oct 2023, In: Gastroenterology. 165, 4, p. 946-962.e13

    Research output: Contribution to journal/Conference contribution in journal/Contribution to newspaperJournal articleResearchpeer-review

    Open Access
    File
    10 Citations (Scopus)
    3 Downloads (Pure)
  • Microbiota-derived 3-IAA influences chemotherapy efficacy in pancreatic cancer

    Tintelnot, J., Xu, Y., Lesker, T. R., Schönlein, M., Konczalla, L., Giannou, A. D., Pelczar, P., Kylies, D., Puelles, V. G., Bielecka, A. A., Peschka, M., Cortesi, F., Riecken, K., Jung, M., Amend, L., Bröring, T. S., Trajkovic-Arsic, M., Siveke, J. T., Renné, T. & Zhang, D. & 11 others, Boeck, S., Strowig, T., Uzunoglu, F. G., Güngör, C., Stein, A., Izbicki, J. R., Bokemeyer, C., Sinn, M., Kimmelman, A. C., Huber, S. & Gagliani, N., Mar 2023, In: Nature. 615, 7950, p. 168-174 7 p.

    Research output: Contribution to journal/Conference contribution in journal/Contribution to newspaperJournal articleResearchpeer-review

    Open Access
    File
    222 Citations (Scopus)
    4 Downloads (Pure)
  • Multicytokine-producing CD4+ T cells characterize the livers of patients with NASH

    Woestemeier, A., Scognamiglio, P., Zhao, Y., Wagner, J., Muscate, F., Casar, C., Siracusa, F., Cortesi, F., Agalioti, T., Müller, S., Sagebiel, A., Konczalla, L., Wahib, R., Karstens, K.-F., Giannou, A. D., Duprée, A., Wolter, S., Wong, M. N., Mühlig, A. K. & Bielecka, A. A. & 11 others, Bansal, V., Zhang, T., Mann, O., Puelles, V. G., Huber, T. B., Lohse, A. W., Izbicki, J. R., Palm, N. W., Bonn, S., Huber, S. & Gagliani, N., Jan 2023, In: JCI Insight. 8, 1, 20 p., e153831.

    Research output: Contribution to journal/Conference contribution in journal/Contribution to newspaperJournal articleResearchpeer-review

    Open Access
    11 Citations (Scopus)
  • The classical pathway triggers pathogenic complement activation in membranous nephropathy

    Seifert, L., Zahner, G., Meyer-Schwesinger, C., Hickstein, N., Dehde, S., Wulf, S., Köllner, S. M. S., Lucas, R., Kylies, D., Froembling, S., Zielinski, S., Kretz, O., Borodovsky, A., Biniaminov, S., Wang, Y., Cheng, H., Koch-Nolte, F., Zipfel, P. F., Hopfer, H. & Puelles, V. G. & 4 others, Panzer, U., Huber, T. B., Wiech, T. & Tomas, N. M., 2023, In: Nature Communications. 14, 1, 18 p., 473.

    Research output: Contribution to journal/Conference contribution in journal/Contribution to newspaperJournal articleResearchpeer-review

    Open Access
    48 Citations (Scopus)
  • 2022

    A high-throughput drug discovery pipeline to optimize kidney normothermic machine perfusion

    Hofmann, S., Grahammer, F., Edenhofer, I., Puelles, V. G., Huber, T. B. & Czogalla, J., Sept 2022, In: Frontiers in Physiology. 13, 974615.

    Research output: Contribution to journal/Conference contribution in journal/Contribution to newspaperJournal articleResearchpeer-review

    Open Access