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Søren Besenbacher

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  1. 2022
  2. Published
    A method to build extended sequence context models of point mutations and indels. / Bethune, Jörn; Kleppe, April; Besenbacher, Søren.
    In: Nature Communications, Vol. 13, No. 1, 7884, 12.2022.

    Research output: Contribution to journal/Conference contribution in journal/Contribution to newspaper › Journal article › Research › peer-review

  3. Published
    Unsupervised detection of fragment length signatures of circulating tumor DNA using non-negative matrix factorization. / Renaud, Gabriel; Nørgaard, Maibritt; Lindberg, Johan et al.
    In: eLife, Vol. 11, e71569, 07.2022.

    Research output: Contribution to journal/Conference contribution in journal/Contribution to newspaper › Journal article › Research › peer-review

  4. Published
    Expression patterns and prognostic potential of circular RNAs in mantle cell lymphoma: a study of younger patients from the MCL2 and MCL3 clinical trials. / Dahl, Mette; Husby, Simon; Eskelund, Christian Winther et al.
    In: Leukemia, Vol. 36, No. 1, 01.2022, p. 177-188.

    Research output: Contribution to journal/Conference contribution in journal/Contribution to newspaper › Journal article › Research › peer-review

  5. Published
    The mutationathon highlights the importance of reaching standardization in estimates of pedigree-based germline mutation rates. / Bergeron, Lucie A.; Besenbacher, Søren; Turner, Tychele N. et al.
    In: eLife, Vol. 11, e73577, 01.2022.

    Research output: Contribution to journal/Conference contribution in journal/Contribution to newspaper › Journal article › Research › peer-review

  6. 2021
  7. Published
    Studying mutation rate evolution in primates-a need for systematic comparison of computational pipelines. / Bergeron, Lucie A.; Besenbacher, Søren; Schierup, Mikkel H. et al.
    In: GigaScience, Vol. 10, No. 10, giab072, 10.2021.

    Research output: Contribution to journal/Conference contribution in journal/Contribution to newspaper › Comment/debate/letter to the editor › Research › peer-review

  8. Published
    The germline mutational process in rhesus macaque and its implications for phylogenetic dating. / Bergeron, Lucie A.; Besenbacher, Søren; Bakker, Jaco et al.
    In: GigaScience, Vol. 10, No. 5, giab029, 05.2021.

    Research output: Contribution to journal/Conference contribution in journal/Contribution to newspaper › Journal article › Research › peer-review

  9. 2019
  10. Published
    Direct estimation of mutations in great apes reconciles phylogenetic dating. / Besenbacher, Søren; Hvilsom, Christina; Marques-Bonet, Tomas et al.
    In: Nature Ecology & Evolution, Vol. 3, No. 2, 02.2019, p. 286-292.

    Research output: Contribution to journal/Conference contribution in journal/Contribution to newspaper › Journal article › Research › peer-review

  11. Published
    A novel combined miRNA and methylation marker panel (miMe) for prediction of prostate cancer outcome after radical prostatectomy. / Strand, Siri H; Bavafaye-Haghighi, Elham; Kristensen, Helle et al.
    In: International Journal of Cancer, Vol. 145, No. 12, 2019, p. 3445-3452.

    Research output: Contribution to journal/Conference contribution in journal/Contribution to newspaper › Journal article › Research › peer-review

  12. Published
    Association mapping and disease: Evolutionary perspectives. / Besenbacher, Søren; Mailund, Thomas; Vilhjálmsson, Bjarni J. et al.
    Evolutionary genomics: Statistical and computational methods. ed. / Maria Anisimova. 2. ed. Springer, 2019. p. 533-553 (Methods in Molecular Biology, Vol. 1910).

    Research output: Contribution to book/anthology/report/proceeding › Book chapter › Research › peer-review

  13. Published
    Hierarchical classification of cancers of unknown primary using multi-omics data. / Bavafaye Haghighi, Elham; Knudsen, Michael; Laursen, Britt Elmedal et al.
    In: Cancer Informatics, Vol. 18, 2019.

    Research output: Contribution to journal/Conference contribution in journal/Contribution to newspaper › Journal article › Research › peer-review

  14. 2018
  15. Published
    Proteomic profiling identifies outcome-predictive markers in patients with peripheral T-cell lymphoma, not otherwise specified. / Ludvigsen, Maja; Bjerregård Pedersen, Martin; Lystlund Lauridsen, Kristina et al.
    In: Blood Advances, Vol. 2, No. 19, 09.10.2018, p. 2533-2542.

    Research output: Contribution to journal/Conference contribution in journal/Contribution to newspaper › Journal article › Research › peer-review

  16. Published
    A site specific model and analysis of the neutral somatic mutation rate in whole-genome cancer data. / Bertl, Johanna; Guo, Qianyun; Juul, Malene et al.
    In: BMC Bioinformatics , Vol. 19, No. 147, 147, 19.04.2018.

    Research output: Contribution to journal/Conference contribution in journal/Contribution to newspaper › Journal article › Research › peer-review

  17. 2017
  18. Published
    Prognostic miRNA classifier in early-stage mycosis fungoides: development and validation in a Danish nationwide study. / Lindahl, Lise M; Besenbacher, Søren; Rittig, Anne H et al.
    In: Blood, Vol. 131, No. 7, 06-788950, 12.2017, p. 759-770.

    Research output: Contribution to journal/Conference contribution in journal/Contribution to newspaper › Journal article › Research › peer-review

  19. Published
    Data Descriptor: Whole genome characterization of sequence diversity of 15,220 Icelanders. / Jónsson, Hakon; Sulem, Patrick; Kehr, Birte et al.
    In: Scientific Data, Vol. 4, 170115, 21.09.2017.

    Research output: Contribution to journal/Conference contribution in journal/Contribution to newspaper › Journal article › Research › peer-review

  20. Published
    Assembly and analysis of 100 full MHC haplotypes from the Danish population. / Jensen, Jacob Malte; Villesen, Palle; Friborg, Rune M et al.
    In: Genome Research, Vol. 27, No. 9, 09.2017, p. 1597-1607.

    Research output: Contribution to journal/Conference contribution in journal/Contribution to newspaper › Journal article › Research › peer-review

  21. Published
    Sequencing and de novo assembly of 150 genomes from Denmark as a population reference. / Maretty, Lasse; Jensen, Jacob Malte; Petersen, Bent et al.
    In: Nature, Vol. 548, No. 7665, 03.08.2017, p. 87-91.

    Research output: Contribution to journal/Conference contribution in journal/Contribution to newspaper › Journal article › Research › peer-review

  22. Published
    Prediction of Primary Tumors in Cancers of Unknown Primary. / Søndergaard, Dan; Nielsen, Svend; Pedersen, Christian N S et al.
    In: Journal of integrative bioinformatics, Vol. 14, No. 2, 07.07.2017.

    Research output: Contribution to journal/Conference contribution in journal/Contribution to newspaper › Journal article › Research › peer-review

  23. Published
    Modeling non-equilibrium population using variable-chromosome-length genetic algorithm. / Fuad, Muhammad Marwan Muhammad; Besenbacher, Soren.
    2017 IEEE Congress on Evolutionary Computation, CEC 2017 - Proceedings. Institute of Electrical and Electronics Engineers Inc., 2017. p. 2566-2573 7969617.

    Research output: Contribution to book/anthology/report/proceeding › Article in proceedings › Research › peer-review

  24. Published
    A Site Specific Model And Analysis Of The Neutral Somatic Mutation Rate In Whole-Genome Cancer Data. / Bertl, Johanna; Guo, Qianyun; Rasmussen, Malene Juul et al.
    2017.

    Research output: Working paper/Preprint › Working paper › Research › peer-review

  25. 2016
  26. Published
    Multi-nucleotide de novo Mutations in Humans. / Besenbacher, Søren; Sulem, Patrick; Helgason, Agnar et al.
    In: P L o S Genetics, Vol. 12, No. 11, e1006315, 11.2016.

    Research output: Contribution to journal/Conference contribution in journal/Contribution to newspaper › Journal article › Research › peer-review

  27. Published
    Pathway Analysis of Skin from Psoriasis Patients after Adalimumab Treatment Reveals New Early Events in the Anti-Inflammatory Mechanism of Anti-TNF-α. / Nielsen, Ane Langkilde-Lauesen; Olsen, Lene C. (Member of author collaboration); Saetrom, Pål (Member of author collaboration) et al.
    In: P L o S One, Vol. 11, No. 12, e0167437, 2016, p. e0167437.

    Research output: Contribution to journal/Conference contribution in journal/Contribution to newspaper › Journal article › Research › peer-review

  28. 2015
  29. Published
    Large-scale whole-genome sequencing of the Icelandic population. / Gudbjartsson, Daniel F; Helgason, Hannes; Gudjonsson, Sigurjon A et al.
    In: Nature Genetics, Vol. 47, No. 5, 05.2015, p. 435-44.

    Research output: Contribution to journal/Conference contribution in journal/Contribution to newspaper › Journal article › Research › peer-review

  30. Published
    Novel variation and de novo mutation rates in population-wide de novo assembled Danish trios. / Besenbacher, Søren; Liu, Siyang; Izarzugaza, José M G et al.
    In: Nature Communications, Vol. 6, 5969, 2015.

    Research output: Contribution to journal/Conference contribution in journal/Contribution to newspaper › Journal article › Research › peer-review

  31. 2014
  32. Published
    Variation and association to diabetes in 2000 full mtDNA sequences mined from an exome study in a Danish population. / Li, Shengting; Besenbacher, Soren; Li, Yingrui et al.
    In: European Journal of Human Genetics, 22.01.2014.

    Research output: Contribution to journal/Conference contribution in journal/Contribution to newspaper › Journal article › Research › peer-review

  33. Published
    Identifying disease associated genes by network propagation. / Qian, Yu; Besenbacher, Soren; Mailund, Thomas et al.
    In: B M C Systems Biology, Vol. 8, No. Suppl 1, 2014, p. S6.

    Research output: Contribution to journal/Conference contribution in journal/Contribution to newspaper › Conference abstract in journal › Research

  34. 2013
  35. Published
    A common biological basis of obesity and nicotine addiction. / Thorgeirsson, T E; Gudbjartsson, D F; Sulem, P et al.
    In: Translational Psychiatry, Vol. 3, 2013, p. e308.

    Research output: Contribution to journal/Conference contribution in journal/Contribution to newspaper › Journal article › Research › peer-review

  36. 2012
  37. Published
    Association mapping and disease: evolutionary perspectives. / Besenbacher, Søren; Mailund, Thomas; Schierup, Mikkel H.
    In: Methods in Molecular Biology, Vol. 856, 2012, p. 275-91.

    Research output: Contribution to journal/Conference contribution in journal/Contribution to newspaper › Journal article › Research › peer-review

  38. Published
    Rate of de novo mutations and the importance of father's age to disease risk. / Kong, Augustine; Frigge, Michael L; Masson, Gisli et al.
    In: Nature, Vol. 488, No. 7412, 2012, p. 471-5.

    Research output: Contribution to journal/Conference contribution in journal/Contribution to newspaper › Journal article › Research › peer-review

  39. 2011
  40. Published
    European genome-wide association study identifies SLC14A1 as a new urinary bladder cancer susceptibility gene. / Rafnar, Thorunn; Vermeulen, Sita H; Sulem, Patrick et al.
    In: Human Molecular Genetics, Vol. 20, No. 21, 2011, p. 4268-4281.

    Research output: Contribution to journal/Conference contribution in journal/Contribution to newspaper › Journal article › Research › peer-review

  41. Published
    Genome-wide significant association between a sequence variant at 15q15.2 and lung cancer risk. / Rafnar, Thorunn; Sulem, Patrick; Besenbacher, Søren et al.
    In: Cancer Research, Vol. 71, No. 4, 2011, p. 1356-61.

    Research output: Contribution to journal/Conference contribution in journal/Contribution to newspaper › Journal article › Research › peer-review

  42. Published
    Identification of low-frequency variants associated with gout and serum uric acid levels. / Sulem, Patrick; Gudbjartsson, Daniel F; Walters, G Bragi et al.
    In: Nature Genetics, Vol. 43, No. 11, 2011, p. 1127-30.

    Research output: Contribution to journal/Conference contribution in journal/Contribution to newspaper › Journal article › Research › peer-review

  43. Published
    Mutations in BRIP1 confer high risk of ovarian cancer. / Rafnar, Thorunn; Gudbjartsson, Daniel F; Sulem, Patrick et al.
    In: Nature Genetics, Vol. 43, No. 11, 2011, p. 1104-7.

    Research output: Contribution to journal/Conference contribution in journal/Contribution to newspaper › Journal article › Research › peer-review

  44. Published
    The CRP and GDNF genes do not contribute to apnea-hypopnea index or risk of obstructive sleep apnea. / Gislason, Thorarinn; Pack, Allan I; Helgadottir, Hafdis T et al.
    In: American Journal of Respiratory and Critical Care Medicine, Vol. 184, No. 1, 2011, p. 143-4; author reply 144-5.

    Research output: Contribution to journal/Conference contribution in journal/Contribution to newspaper › Journal article › Research › peer-review

  45. 2010
  46. Published
    Indexing and searching a mass spectrometry database. / Besenbacher, Søren; Schwikowski, B.; Stoye, J.
    Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics). Vol. 6060 LNCS 2010. p. 62-76.

    Research output: Contribution to book/anthology/report/proceeding › Book chapter › Research › peer-review

  47. Published
    A genome-wide association study identifies susceptibility loci for ovarian cancer at 2q31 and 8q24. / Goode, Ellen L; Chenevix-Trench, Georgia; Song, Honglin et al.
    In: Nature Genetics, Vol. 42, No. 10, 2010, p. 874-9.

    Research output: Contribution to journal/Conference contribution in journal/Contribution to newspaper › Journal article › Research › peer-review

  48. Published
    A multi-stage genome-wide association study of bladder cancer identifies multiple susceptibility loci. / Rothman, Nathaniel; Garcia-Closas, Montserrat; Chatterjee, Nilanjan et al.
    In: Nature Genetics, Vol. 42, No. 11, 2010, p. 978-84.

    Research output: Contribution to journal/Conference contribution in journal/Contribution to newspaper › Journal article › Research › peer-review

  49. Published
    Ancestry-shift refinement mapping of the C6orf97-ESR1 breast cancer susceptibility locus. / Stacey, Simon N; Sulem, Patrick; Zanon, Carlo et al.
    In: PLoS genetics, Vol. 6, No. 7, 2010, p. e1001029.

    Research output: Contribution to journal/Conference contribution in journal/Contribution to newspaper › Journal article › Research › peer-review

  50. Published
    A sequence variant at 4p16.3 confers susceptibility to urinary bladder cancer. / Kiemeney, Lambertus A; Sulem, Patrick; Besenbacher, Søren et al.
    In: Nature Genetics, Vol. 42, No. 5, 2010, p. 415-9.

    Research output: Contribution to journal/Conference contribution in journal/Contribution to newspaper › Journal article › Research › peer-review

  51. Published
    Common variants at 19p13 are associated with susceptibility to ovarian cancer. / Bolton, Kelly L; Tyrer, Jonathan; Song, Honglin et al.
    In: Nature Genetics, Vol. 42, No. 10, 2010, p. 880-4.

    Research output: Contribution to journal/Conference contribution in journal/Contribution to newspaper › Journal article › Research › peer-review

  52. Published
    Genetic correction of PSA values using sequence variants associated with PSA levels. / Gudmundsson, Julius; Besenbacher, Søren; Sulem, Patrick et al.
    In: Science translational medicine, Vol. 2, No. 62, 2010, p. 62ra92.

    Research output: Contribution to journal/Conference contribution in journal/Contribution to newspaper › Journal article › Research › peer-review

  53. 2009
  54. Published
    Parental origin of sequence variants associated with complex diseases. / Kong, Augustine; Steinthorsdottir, Valgerdur; Masson, Gisli et al.
    In: Nature, Vol. 462, No. 7275, 17.12.2009, p. 868-74.

    Research output: Contribution to journal/Conference contribution in journal/Contribution to newspaper › Journal article › Research › peer-review

  55. Published
    A fast algorithm for genome wide haplotype pattern mining. / Besenbacher, Søren; Pedersen, Christian Storm; Mailund, Thomas.
    In: B M C Bioinformatics, No. suppl. 1, 2009, p. 772.

    Research output: Contribution to journal/Conference contribution in journal/Contribution to newspaper › Conference article › Research › peer-review

  56. Published
    Local phylogeny mapping of quantitative traits: Higher accuracy and better ranking than single marker association in genomewide scans. / Besenbacher, Søren; Mailund, Thomas; Schierup, Mikkel Heide.
    In: Genetics, Vol. 181, 2009, p. 747-753.

    Research output: Contribution to journal/Conference contribution in journal/Contribution to newspaper › Journal article › Research › peer-review

  57. 2008
  58. Published
    Challenges in whole-genome association mapping. / Besenbacher, Søren.
    Aarhus Universitet, 2008.

    Research output: Book/anthology/dissertation/report › Ph.D. thesis

  59. Published
    Local Phylogeny Mapping of Quantitative Traits: Higher Accuracy and Better Ranking Than Single Marker Association in Genomewide Scans. / Besenbacher, Søren; Mailund, Thomas; Schierup, Mikkel H.
    In: Genetics, 2008.

    Research output: Contribution to journal/Conference contribution in journal/Contribution to newspaper › Journal article › Research › peer-review

  60. 2006
  61. Published
    Whole genome association mapping by incompatibilities and local perfect phylogenies. / Mailund, Thomas; Besenbacher, Søren; Schierup, Mikkel Heide.
    In: B M C Bioinformatics, Vol. 7, No. 454, 2006.

    Research output: Contribution to journal/Conference contribution in journal/Contribution to newspaper › Journal article › Research › peer-review

  62. 2005
  63. Published
    RBT—A Tool for Building Refined Buneman Trees. / Besenbacher, Søren; Mailund; Westh-Nielsen, Lasse et al.
    In: Bioinformatics, Vol. 21, No. 8, 2005, p. 1711-1712.

    Research output: Contribution to journal/Conference contribution in journal/Contribution to newspaper › Journal article › Research › peer-review

  64. 2004
  65. Published
    RBT -- A tool for building refined Buneman trees. / Besenbacher, Søren; Mailund, Thomas; Westh-Nielsen, L. et al.
    In: Bioinformatics, Vol. doi:10.1093/bti195, 2004, p. in press.

    Research output: Contribution to journal/Conference contribution in journal/Contribution to newspaper › Journal article › Research

  66. Published
    RBT - A Tool for Building Refined Buneman Trees. / Besenbacher, S.; Mailund, T.; Westh-Nielsen, L. et al.
    In: Bioinformatics, Vol. 21, No. 8, 2004, p. 1711-1712.

    Research output: Contribution to journal/Conference contribution in journal/Contribution to newspaper › Journal article › Research › peer-review