Research output per year
Research output per year
- 1 - 50 out of 76 results
Search results
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2024
Bentisk biodiversitet ved Taarbæk rev: Forundersøgelse ved dykker, haps og eDNA prøver
Stæhr, P. A., Buur, H., Dahl, K., Bach, L., Winding, A. & Sapkota, R., Jan 2024, Aarhus University, DCE - Danish Centre for Environment and Energy. 34 p. (Teknisk rapport fra DCE - Nationalt Center for Miljø og Energi; No. 304, Vol. 2024).Research output: Book/anthology/dissertation/report › Report › Commissioned
Open Access -
DNA-based monitoring of Non-Indigenous Species (NIS)
Hablützel, P. I., Martinez Arbizu, P., Bilsen, A., Christodoulou, M., Delacauw, S., Deneudt, K., Khodami, S., Lagaisse, R., Heynderickx, H., Obst, M., Sapkota, R., Sundberg, P., Uhlir, C., Stæhr, P. A. & Winding, A., 2024, Interreg North Sea Region. 44 p.Research output: Book/anthology/dissertation/report › Report › Commissioned
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Fungal removal of cyanotoxins in constructed wetlands: The forgotten degraders
Álvarez, Á. G., Quer, A. M., Ellegaard-Jensen, L., Sapkota, R., Carvalho, P. N. & Johansen, A., Jun 2024, In: Science of the Total Environment. 929, 172590.Research output: Contribution to journal/Conference contribution in journal/Contribution to newspaper › Journal article › Research › peer-review
Open Access1 Citation (Scopus) -
Host- and Fusarium-adapted bacterial consortia alter microbial community structures in Arabidopsis roots and suppress Fusarium oxysporum
Kudjordjie, E. N., Sapkota, R. & Nicolaisen, M., Mar 2024, In: Phytobiomes Journal. 8, 1, p. 85-96 12 p.Research output: Contribution to journal/Conference contribution in journal/Contribution to newspaper › Journal article › Research › peer-review
Open Access1 Citation (Scopus) -
Integrating viruses into soil food web biogeochemistry
Carreira, C., Lønborg, C., Acharya, B., Aryal, L., Buivydaite, Z., Borim Corrêa, F., Chen, T., Lorenzen Elberg, C., Emerson, J. B., Hillary, L., Khadka, R. B., Langlois, V., Mason-Jones, K., Netherway, T., Sutela, S., Trubl, G., Wa Kang'eri, A., Wang, R., White, R. A. & Winding, A. & 2 others, , Aug 2024, In: Nature Microbiology. 9, 8, p. 1918–1928 11 p.Research output: Contribution to journal/Conference contribution in journal/Contribution to newspaper › Journal article › Research › peer-review
1 Citation (Scopus) -
New insights into RNA mycoviruses of fungal pathogens causing Fusarium head blight
Buivydaite, Z., Winding, A., Jørgensen, L. N., Zervas, A. & Sapkota, R., Nov 2024, In: Virus Research. 349, 13 p., 199462.Research output: Contribution to journal/Conference contribution in journal/Contribution to newspaper › Journal article › Research › peer-review
Open Access -
Prokaryote Composition and Structure of Rumen Fluid before and after In Vitro Rumen Fermentation
Dhakal, R., Neves, A. L. A., Sapkota, R., Khanal, P. & Hansen, H. H., Feb 2024, In: Fermentation . 10, 2, 108.Research output: Contribution to journal/Conference contribution in journal/Contribution to newspaper › Journal article › Research › peer-review
Open Access -
S. Andrew Inkpen and W. Ford Doolittle: Can microbial communities regenerate?
Sapkota, R., 2024, (E-pub ahead of print) In: Community Ecology. 1 p.Research output: Contribution to journal/Conference contribution in journal/Contribution to newspaper › Literature review › Communication
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Temporal dynamics of volatile fatty acids profile, methane production, and prokaryotic community in an in-vitro rumen fermentation system fed with maize silage
Dhakal, R., Neves, A. L., Sapkota, R., Khanal, P., Ellegaard-Jensen, L., Winding, A. & Hansen, H. H., 20 Feb 2024, In: Frontiers in Microbiology. 15, p. 1271599 1 p., 1271599.Research output: Contribution to journal/Conference contribution in journal/Contribution to newspaper › Journal article › Research › peer-review
Open Access -
The potential of Pseudomonas fluorescens SBW25 to produce viscosin enhances wheat root colonization and shapes root-associated microbial communities in a plant genotype-dependent manner in soil systems
Guan, Y., Bak, F., Hennessy, R. C., Horn Herms, C., Elberg, C. L., Dresbøll, D. B., Winding, A., Sapkota, R. & Nicolaisen, M. H., 1 Jul 2024, In: mSphere. 9, 7, p. e0029424 20 p., e00294-24.Research output: Contribution to journal/Conference contribution in journal/Contribution to newspaper › Journal article › Research › peer-review
Open Access1 Citation (Scopus) -
Transmission of mycoviruses: new possibilities
Buivydaite, Z., Winding, A. & Sapkota, R., Jun 2024, In: Frontiers in Microbiology. 15, p. 1432840 1 p., 1432840.Research output: Contribution to journal/Conference contribution in journal/Contribution to newspaper › Journal article › Research › peer-review
Open Access1 Citation (Scopus) -
Virkemidler til reduktion af klimagasser i landbruget - 2024
Andersen, M. N. (Editor), Adamsen, A. P. S. (Editor), Lærke, P. E., Ugilt Larsen, S., Jørgensen, U., Olesen, J. E., Manevski, K., Bay, S. S., Hutchings, N., Hansen, E. M., Munkholm, L. J., Børgesen, C. D., Thomsen, I. K., Elsgaard, L., Petersen, S. O., Toda, M., Ntinyari, W., Sørensen, P., Audet, J. & Krogh, P. H. & 28 others, , 10 Jun 2024, Aarhus Universitet - DCA - Nationalt Center for Fødevarer og Jordbrug. 373 p. (DCA rapport; No. 227, Vol. 2024).Research output: Book/anthology/dissertation/report › Report › Commissioned
Open AccessFile1038 Downloads (Pure) -
2023
Activity of root-knot nematodes associated with composition of a nematode-attached microbiome and the surrounding soil microbiota
Topalovic, O., Bak, F., Santos, S., Sikder, M. M., Sapkota, R., Ekelund, F., Nicolaisen, M. H. & Madsen, M. V., Sept 2023, In: FEMS Microbiology Ecology. 99, 9, 11 p., fiad091.Research output: Contribution to journal/Conference contribution in journal/Contribution to newspaper › Journal article › Research › peer-review
3 Citations (Scopus) -
Bewertung der biologischen Vielfalt mittels DNA-Extraktion aus Bodenproben von BDF: Abschlussbericht
Translated title of the contribution :Biodiversity assessment using DNA extraction from soil samples from permanent soil monitoring sites Research output: Book/anthology/dissertation/report › Report › Research
Open Access -
Comparing Earthworm Biodiversity Estimated by DNA Metabarcoding and Morphology-based Approaches
Lilja, M. A., Buivydaite, Z., Zervas, A., Krogh, P. H., Winding, B. W., Winding, A. & Sapkota, R., May 2023, In: Applied Soil Ecology. 185, 4 p., 104798.Research output: Contribution to journal/Conference contribution in journal/Contribution to newspaper › Journal article › Research › peer-review
Open AccessFile3 Citations (Scopus)7 Downloads (Pure) -
DNA-based monitoring of Non-Indigenous Species
Hablützel, P. I., Martinez Arbizu, P., Bilsen, A., Christodoulo, M., Delacauw, S., Deneudt, K., Khodami, S., Lagaisse, R., Heynderickx, H., Obst, M., Sapkota, R., Sundberg, P., Uhlir, C., Stæhr, P. A. & Winding, A., Jun 2023, Interreg North Sea Region. 45 p.Research output: Book/anthology/dissertation/report › Report › Research
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DNA-based monitoring of soft sediments
Derycke, S., Beentjes, K., Christodoulou, M., Hansen, J. L. S., Khodami, S., Kröncke, I., Martinez Arbizu, P., Sapkota, R., Stæhr, P. A., Van den Bulcke, L., Winding, A. & De Backer, A., May 2023, Interreg North Sea Region. 60 p.Research output: Book/anthology/dissertation/report › Report › Research
Open Access -
DNA metabarcoding on repeat: Sequencing data of marine macrobenthos are reproducible and robust across labs and protocols
Van den Bulcke, L., De Backer, A., Wittoeck, J., Beentjes, K., Maes, S., Christodoulou, M., Martinez Arbizu, P., Sapkota, R., Van der Hoorn, B., Winding, A., Hostens, K. & Derycke, S., Jun 2023, In: Ecological Indicators. 150, 13 p., 110207.Research output: Contribution to journal/Conference contribution in journal/Contribution to newspaper › Journal article › Research › peer-review
Open Access2 Citations (Scopus) -
Earthworms shape prokaryotic communities and affect extracellular enzyme activities in agricultural soil
Buivydaite, Z., Lilja, M. A., Sapkota, R., Hansen, B. W., Ellegaard-Jensen, L., Hendriksen, N. B., Krogh, P. H. & Winding, A., Mar 2023, In: European Journal of Soil Biology. 115, 8 p., 103474.Research output: Contribution to journal/Conference contribution in journal/Contribution to newspaper › Journal article › Research › peer-review
Open AccessFile5 Citations (Scopus)55 Downloads (Pure) -
Fungal Communities of Spring Barley from Seedling Emergence to Harvest During a Severe Puccinia hordei Epidemic
Sapkota, R., Jørgensen, L. N., Boeglin, L. & Nicolaisen, M., Feb 2023, In: Microbial Ecology. 85, 2, p. 617-627 11 p.Research output: Contribution to journal/Conference contribution in journal/Contribution to newspaper › Journal article › Research › peer-review
7 Citations (Scopus) -
Havneovervågning af ikke-hjemmehørende arter 2021: Havstrategiens deskriptor 2
Andersen, N. R., Stæhr, P. A., Andersen, K. R., Buur, H., Jakobsen, H., Winding, A. & Sapkota, R., Feb 2023, Aarhus University, DCE - Danish Centre for Environment and Energy. 65 p. (Videnskabelig rapport fra DCE; No. 534).Research output: Book/anthology/dissertation/report › Report › Research › peer-review
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Identification, dispersal, and possible mitigation responses for non-indigenous species in Danish Wadden Sea area
Stæhr, P. A., Andersen, N. R., Andersen, K. R., Buur, H., Jakobsen, H., Maar, M., Larsen, J., Sapkota, R., Schourup-Kristensen, V., Zimmer, K. & Winding, A., 2023, Aarhus University, DCE - Danish Centre for Environment and Energy. 72 p. (Scientific Report from DCE - Danish Centre for Environment and Energy; No. 547).Research output: Book/anthology/dissertation/report › Report › Commissioned › peer-review
Open Access -
Improving the nutritional values of yellow mealworm Tenebrio molitor (Coleoptera: Tenebrionidae) larvae as an animal feed ingredient: a review
Syahrulawal, L., Torske, M. O., Sapkota, R., Næss, G. & Khanal, P., 3 Dec 2023, In: Journal of Animal Science and Biotechnology. 14, 1, 18 p., 146.Research output: Contribution to journal/Conference contribution in journal/Contribution to newspaper › Review › Research › peer-review
Open Access11 Citations (Scopus) -
Meeting report: The first soil viral workshop 2022
Buivydaite, Z., Aryal, L., Corrêa, F. B., Chen, T., Langlois, V., Elberg, C. L., Netherway, T., Wang, R., Zhao, T., Acharya, B., Emerson, J. B., Hillary, L., Khadka, R. B., Mason-Jones, K., Sapkota, R., Sutela, S., Trubl, G., White, R. A., Winding, A. & Carreira, C., Jul 2023, In: Virus Research. 331, 5 p., 199121.Research output: Contribution to journal/Conference contribution in journal/Contribution to newspaper › Journal article › Communication
Open Access -
Spatial and temporal dynamics of coastal benthic microbial communities along a salinity gradient
Petersen, H. C., Sapkota, R., Hiillos, A.-L., Hansen, B. W., Banta, G. T. & Knott, K. E., Sept 2023, In: Aquatic Microbial Ecology. 89, p. 127-142 16 p.Research output: Contribution to journal/Conference contribution in journal/Contribution to newspaper › Journal article › Research › peer-review
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Use of metabarcoding to detect non-indigenous species in Danish harbors: Methods comparison
Sapkota, R., Winding, A., Stæhr, P. A., Andersen, N. R., Buur, H. & Hablutzel, P., Mar 2023, Aarhus University, DCE - Danish Centre for Environment and Energy. 30 p. (Technical Report from DCE – Danish Centre for Environment and Energy; No. 267).Research output: Book/anthology/dissertation/report › Report › Research › peer-review
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Yellow mealworms (Tenebrio molitor) as an alternative animal feed source: A comprehensive characterization of nutritional values and the larval gut microbiome
Khanal, P., Pandey, D., Næss, G., Cabrita, A. R. J., Fonseca, A. J. M., Maia, M. R. G., Timilisina, B., Veldkamp, T., Sapkota, R. & Overrein, H., Feb 2023, In: Journal of Cleaner Production. 389, 15 p., 136104.Research output: Contribution to journal/Conference contribution in journal/Contribution to newspaper › Journal article › Research › peer-review
Open AccessFile29 Citations (Scopus)3 Downloads (Pure) -
2022
Effects of nitrification inhibitors on non-targeted soil microorganisms
Sapkota, R., Krogh, P. H., Lilja, M. A., Buivydaite, Z. & Winding, A., May 2022.Research output: Contribution to conference › Conference abstract for conference › Research
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Environmental DNA monitoring of biodiversity hotspots in Danish marine waters
Stæhr, P. A., Dahl, K., Buur, H., Göke, C., Sapkota, R., Winding, A., Panova, M., Obst, M. & Sundberg, P., Jan 2022, In: Frontiers in Marine Science. 8, 800474.Research output: Contribution to journal/Conference contribution in journal/Contribution to newspaper › Journal article › Research › peer-review
Open Access15 Citations (Scopus) -
Fusarium oxysporum Disrupts Microbiome-Metabolome Networks in Arabidopsis thaliana Roots
Kudjordjie, E. N., Hooshmand, K., Sapkota, R., Darbani, B., Fomsgaard, I. S. & Nicolaisen, M., Aug 2022, In: Microbiology Spectrum. 10, 4, e01226-22.Research output: Contribution to journal/Conference contribution in journal/Contribution to newspaper › Journal article › Research › peer-review
Open Access12 Citations (Scopus) -
Interspecies and seasonal variations in macroalgae from the Nordic region: Chemical composition and impacts on rumen fermentation and microbiome assembly
Pandey, D., Hansen, H. H., Dhakal, R., Aryal, N., Rai, S. P., Sapkota, R., Nielsen, M. O., Novoa-Garrido, M. & Khanal, P., Aug 2022, In: Journal of Cleaner Production. 363, 18 p., 132456.Research output: Contribution to journal/Conference contribution in journal/Contribution to newspaper › Journal article › Research › peer-review
Open AccessFile23 Citations (Scopus)39 Downloads (Pure) -
Mycoviruses in Fusarium culmorum identified by high-throughput sequencing
Sapkota, R., Buivydaite, Z. & Winding, A., Sept 2022.Research output: Contribution to conference › Poster › Research
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Nitrification Inhibitors Effect on Soil Microbiome
Sapkota, R., Lilja, M. A., Buivydaite, Z. & Winding, A., Aug 2022.Research output: Contribution to conference › Conference abstract for conference › Research
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Priming with host-associated bacterial consortia alters microbial community structures in Arabidopsis roots and suppresses Fusarium oxysporum
Kudjordjie, E. N., Sapkota, R. & Nicolaisen, M., Oct 2022, p. 79. 1 p.Research output: Contribution to conference › Poster › Research › peer-review
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The soil RNA virome
Carreira, C., Winding, A. & Sapkota, R., Sept 2022.Research output: Contribution to conference › Poster › Communication
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The soil RNA virome
Carreira, C., Winding, A. & Sapkota, R., Nov 2022.Research output: Contribution to conference › Poster › Communication
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The soil RNA virome
Carreira, C., Winding, A. & Sapkota, R., Aug 2022.Research output: Contribution to conference › Poster › Communication
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2021
Arabidopsis assemble distinct root-associated microbiomes through the synthesis of an array of defense metabolites
Kudjordjie, E. N., Sapkota, R. & Nicolaisen, M., Oct 2021, In: PLOS ONE. 16, 10, e0259171.Research output: Contribution to journal/Conference contribution in journal/Contribution to newspaper › Journal article › Research › peer-review
Open Access27 Citations (Scopus) -
Biokul som jordforbedringsmiddel
Müller-Stöver, D., Petersen, C. T., Bruun, E. W., Diamantopoulos, E., Henriksen, U. B., Sárossy, Z., Ravenni, G., Winding, A., Sapkota, R. & Vestergaard, A., 2021, In: Landbrugsavisen, Agro. MajResearch output: Contribution to journal/Conference contribution in journal/Contribution to newspaper › Journal article › Research › peer-review
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Effects of nitrification inhibitors on Danish soil organisms
Winding, A., Krogh, P. H., Lilja, M. A., Buivydaitė, Ž. & Sapkota, R., 28 Jun 2021.Research output: Contribution to conference › Poster › Research
File94 Downloads (Pure) -
Miljøeffekter af nitrifikationshæmmere
Lilja, M. A., Buivydaite, Z., Krogh, P. H., Sapkota, R. & Winding, A., Dec 2021Research output: Other contribution › Net publication - Internet publication › Research › peer-review
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2020
Breeding selection imposed a differential selective pressure on the wheat root-associated microbiome
Kinnunen-Grubb, M., Sapkota, R., Vignola, M., Marques Nunes, I. & Nicolaisen, M., Nov 2020, In: FEMS Microbiology Ecology. 96, 11, 11 p., fiaa196.Research output: Contribution to journal/Conference contribution in journal/Contribution to newspaper › Journal article › Research › peer-review
24 Citations (Scopus) -
Diseases in red fescue
Jørgensen, L. N., Madsen, H.-P., Nicolaisen, M. & Sapkota, R., May 2020, Applied crop protection 2019. Jørgensen, L. N., Heick, T. M., Abuley, I. K., Mathiassen, S. K., Jensen, P. K., Kristjansen, H. S. & Hartvig, P. (eds.). Slagelse: Aarhus Universitet - DCA - Nationalt Center for Fødevarer og Jordbrug, p. 72-76 5 p. (DCA rapport; No. 167).Research output: Contribution to book/anthology/report/proceeding › Report chapter › Communication
Open AccessFile54 Downloads (Pure) -
Evaluation of metabarcoding primers for analysis of soil nematode communities
Sikder, M. M., Madsen, M. V., Sapkota, R., Kyndt, T. & Nicolaisen, M., 2020, In: Diversity. 12, 10, p. 1-14 14 p., 388.Research output: Contribution to journal/Conference contribution in journal/Contribution to newspaper › Journal article › Research › peer-review
Open AccessFile22 Citations (Scopus)108 Downloads (Pure) -
Fusarium Head Blight Modifies Fungal Endophytic Communities During Infection of Wheat Spikes
Rojas, E. C., Sapkota, R., Jensen, B., Jørgensen, H. J. L., Henriksson, T., Jørgensen, L. N., Nicolaisen, M. & Collinge, D. B., Feb 2020, In: Microbial Ecology. 79, 2, p. 397-408 12 p.Research output: Contribution to journal/Conference contribution in journal/Contribution to newspaper › Journal article › Research › peer-review
Open AccessFile56 Citations (Scopus)96 Downloads (Pure) -
Insights into the earthworm gut multi-kingdom microbial communities
Sapkota, R., Santos, S., Farias, P. D. G., Krogh, P. H. & Winding, A., Jul 2020, In: Science of the Total Environment. 727, 138301.Research output: Contribution to journal/Conference contribution in journal/Contribution to newspaper › Journal article › Research › peer-review
64 Citations (Scopus) -
2019
eDNA in environmental monitoring
Winding, A., Bang-Andreasen, T., Hansen, L. H., Panitz, F., Krogh, P. H., Krause-Jensen, D., Stæhr, P., Nicolaisen, M., Hendriksen, N. B., Sapkota, R., Santos, S. & Andersen, L. W., 8 Jan 2019, Aarhus: Aarhus University, DCE - Danish Centre for Environment and Energy. 40 p. (Teknisk rapport fra DCE - Nationalt Center for Miljø og Energi; No. 133).Research output: Book/anthology/dissertation/report › Report › Research › peer-review
Open Access -
How plant shape their root-associated microbiome to acquire resilience against pathogen infection? What is the mechanism behind?
Hooshmand, K., Kudjordjie, E. N., Sapkota, R., Nicolaisen, M. & Fomsgaard, I. S., 2019, In: Planta Medica. 85, 18, p. 1396-1397 2 p.Research output: Contribution to journal/Conference contribution in journal/Contribution to newspaper › Conference abstract in journal › Research › peer-review
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Maize synthesized benzoxazinoids affect the host associated microbiome
Kudjordjie, E. N., Sapkota, R., Steffensen, S. K., Fomsgaard, I. S. & Nicolaisen, M., 2019, In: Microbiome. 7, 1, 17 p., 59.Research output: Contribution to journal/Conference contribution in journal/Contribution to newspaper › Journal article › Research › peer-review
Open Access189 Citations (Scopus) -
Metabolomics studies of rhizosphere metabolites from 26 accession of Arabidopsis thaliana involved in plant interaction with rhizosphere microorganisms
Hooshmand, K., Kudjordjie, E. N., Sapkota, R., Shen, T., Fiehn, O., Nicolaisen, M. & Fomsgaard, I. S., Jun 2019.Research output: Contribution to conference › Poster › Research › peer-review