Niels Martin Schmidt

Monitoring fungal communities with the Global Spore Sampling Project

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DOI

  • Otso Ovaskainen, Department of Biosciences, University of Helsinki, Helsingin yliopisto, Norges teknisk-naturvitenskapelige universitet, Trondheim, Unknown
  • Nerea Abrego, University of Helsinki, Finland
  • P. Somervuo, University of Helsinki, Finland
  • Isabella Palorinne, University of Helsinki, Finland
  • Bess Hardwick, Helsinki University, University of Liverpool, Finland
  • J.M. Pitkänen, Swedish University of Agricultural Sciences, Natural Resources Institute Finland (Luke), Finland
  • Nigel R. Andrew, University of New England
  • ,
  • Pascal Alex Niklaus, University of Zurich
  • ,
  • Niels Martin Schmidt
  • Sebastian Seibold, Technical University of Munich, Julius-Maximilians-University Würzburg
  • ,
  • Juliane Vogt, Technical University of Munich
  • ,
  • Evgeny V. Zakharov, University of Guelph
  • ,
  • Paul Hebert, University of Guelph, Canada
  • Tomas Roslin, Department of Agricultural Sciences, University of Helsinki, Finland
  • Natalia V. Ivanova, University of Guelph

The kingdom Fungi is a megadiverse group represented in all ecosystem types. The global diversity and distribution of fungal taxa are poorly known, in part due to the limitations related to traditional fruit-body survey methods. These previous hurdles are now being overcome by rapidly developing DNA-based surveys. Past fungal DNA surveys have predominantly examined soil samples, which capture high species diversity but represent only the local soil community. Recent work has shown that DNA samples collected from the air with cyclone samplers provide information on fungal diversity at the scale of some tens of kilometers around the sampling location. To test the feasibility of air sampling for investigating global patterns of fungal diversity, we established a new initiative called the Global Spore Sampling Project (GSSP). The GSSP currently involves 50 sampling locations distributed on all continents, with each location collecting two 24-h samples per week. Here we describe the GSSP methodology, including the sampling, DNA extraction and sequencing protocols, and the bioinformatics pipeline. We further report results based on 75 pilot samples from five locations, of which three in Europe, one in Australia, and one in Greenland. The results show highly consistent patterns, suggesting that GSSP holds much promise for systematic global fungal monitoring. The GSSP provides highly standardized sampling across space and time, enabling much-improved estimation of total fungal diversity, the global distribution of different fungal groups, fungal fruiting phenology, and the extent of long-distance dispersal in fungi.

Original languageEnglish
Article number511
JournalFrontiers in Ecology and Evolution
Volume7
Number of pages9
ISSN2296-701X
DOIs
Publication statusPublished - 2020

    Research areas

  • biomonitoring, cyclone sampler, environmental DNA, fungi, global diversity

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