Mads Heilskov Rasmussen

2025

The role of renal and liver function in clinical ctDNA testing

Koudahl Conrad, J. B., Vesterman Henriksen, T., Berg Nors, J., Heilskov Rasmussen, M., Worm Ørntoft, M. B., Hallundbæk Schlesinger, N., Vadgaard Andersen, P., Andersson Gotschalck, K. & Andersen, C. L., 2025, (E-pub / Early view) In: PLOS ONE. 20, 2, p. e0319194

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Open Access

Timing of circulating tumor DNA analysis aimed at guiding adjuvant treatment in colorectal cancer

Henriksen, T. V., Demuth, C., Frydendahl, A., Nors, J., Nesic, M., Rasmussen, M. H., Larsen, O. H., Jaensch, C., Løve, U. S., Andersen, P. V., Kolbro, T., Thorlacius-Ussing, O., Monti, A., Kildsig, J., Bondeven, P., Schlesinger, N. H., Iversen, L. H., Gotschalck, K. A. & Andersen, C. L., 20 Feb 2025, (E-pub / Early view) In: Clinical cancer research : an official journal of the American Association for Cancer Research.

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Whole-genome sequencing of cell-free DNA reveals DNA of tumor origin in plasma from patients with colorectal adenomas

Frydendahl, A., Widman, A. J., Øgaard, N., Arora, A., Halmos, D., Nors, J., Ahrenfeldt, J., Henriksen, T. V., Demuth, C., Raaby, L., Rasmussen, M. H., Therkildsen, C., Landau, D. A. & Andersen, C. L., Apr 2025, In: Molecular Oncology. 19, 4, p. 984-993 10 p.

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Open Access

2024

Beyond basics: Key mutation selection features for successful tumor-informed ctDNA detection

Nesic, M., Rasmussen, M. H., Henriksen, T. V., Demuth, C., Frydendahl, A., Nordentoft, I., Dyrskjøt, L. & Andersen, C. L., Sept 2024, In: International Journal of Cancer. 155, 5, p. 925-933 9 p.

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Open Access

4 Citations (Scopus)

Circulating tumour DNA and risk of recurrence in patients with asymptomatic versus symptomatic colorectal cancer

Øgaard, N., Jensen, S. Ø., Ørntoft, M.-B. W., Demuth, C., Rasmussen, M. H., Henriksen, T. V., Nors, J., Frydendahl, A., Lyskjær, I., Nesic, M., Therkildsen, C., Kleif, J., Gögenur, M., Jørgensen, L. N., Vilandt, J., Seidelin, J. B., Gotschalck, K. A., Jaensch, C., Andersen, B. & Løve, U. S. & 12 others, Thorlacius-Ussing, O., Andersen, P. V., Kolbro, T., Monti, A., Kildsig, J., Bondeven, P., Schlesinger, N. H., Iversen, L. H., Rasmussen, M., Gögenur, I., Bramsen, J. B. & Andersen, C. L., 30 Nov 2024, In: British Journal of Cancer. 131, 10, p. 1707-1715 9 p.

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Open Access

1 Citation (Scopus)

Error-Corrected Deep Targeted Sequencing of Circulating Cell-Free DNA from Colorectal Cancer Patients for Sensitive Detection of Circulating Tumor DNA

Frydendahl, A., Rasmussen, M. H., Jensen, S. Ø., Henriksen, T. V., Demuth, C., Diekema, M., Ditzel, H. J., Wen, S. W. C., Pedersen, J. S., Dyrskjøt, L. & Andersen, C. L., Apr 2024, In: International Journal of Molecular Sciences . 25, 8, 4252.

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Open Access

4 Citations (Scopus)

Unraveling the potential clinical utility of circulating tumor DNA detection in colorectal cancer - evaluation in a nationwide Danish cohort

Henriksen, T. V., Demuth, C., Frydendahl, A., Nors, J., Nesic, M., Rasmussen, M. H., Reinert, T., Larsen, O. H., Jaensch, C., Løve, U. S., Andersen, P. V., Kolbro, T., Thorlacius-Ussing, O., Monti, A., Gögenur, M., Kildsig, J., Bondeven, P., Schlesinger, N. H., Iversen, L. H. & Gotschalck, K. A. & 1 others, Andersen, C. L., Feb 2024, In: Annals of oncology : official journal of the European Society for Medical Oncology. 35, 2, p. 229-239 11 p.

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24 Citations (Scopus)

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Whole-genome Mutational Analysis for Tumor-informed Detection of Circulating Tumor DNA in Patients with Urothelial Carcinoma

Nordentoft, I., Lindskrog, S. V., Birkenkamp-Demtröder, K., Gonzalez, S., Kuzman, M., Levatic, J., Glavas, D., Ptashkin, R., Smadbeck, J., Afterman, D., Lauterman, T., Cohen, Y., Donenhirsh, Z., Tavassoly, I., Alon, U., Frydendahl, A., Rasmussen, M. H., Andersen, C. L., Lamy, P. & Knudsen, M. & 6 others, Polak, P., Zviran, A., Oklander, B., Agerbæk, M., Jensen, J. B. & Dyrskjøt, L., Oct 2024, In: European Urology. 86, 4, p. 301-311 11 p.

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Open Access

10 Citations (Scopus)

2023

Analysis of circulating tumor DNA during checkpoint inhibition in metastatic melanoma using a tumor-agnostic panel

Kisistók, J., Christensen, D. S., Rasmussen, M. H., Duval, L., Aggerholm-Pedersen, N., Luczak, A. A., Sorensen, B. S., Jakobsen, M. R., Oellegaard, T. H. & Birkbak, N. J., Oct 2023, In: Melanoma Research. 33, 5, p. 364-374 11 p.

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1 Citation (Scopus)

4 Downloads (Pure)

Dreams: deep read-level error model for sequencing data applied to low-frequency variant calling and circulating tumor DNA detection

Christensen, M. H., Drue, S. O., Rasmussen, M. H., Frydendahl, A., Lyskjær, I., Demuth, C., Nors, J., Gotschalck, K. A., Iversen, L. H., Andersen, C. L. & Pedersen, J. S., Dec 2023, In: Genome Biology. 24, 1, p. 99 99.

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Open Access

5 Citations (Scopus)

Impact of Whole Genome Doubling on Detection of Circulating Tumor DNA in Colorectal Cancer

Kabel, J., Henriksen, T. V., Demuth, C., Frydendahl, A., Rasmussen, M. H., Nors, J., Birkbak, N. J., Madsen, A. H., Løve, U. S., Andersen, P. V., Kolbro, T., Monti, A., Thorlacius-Ussing, O., Gögenur, M., Kildsig, J., Schlesinger, N. H., Bondeven, P., Iversen, L. H., Gotschalck, K. A. & Andersen, C. L., Feb 2023, In: Cancers. 15, 4, 1136.

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9 Citations (Scopus)

1 Downloads (Pure)

2022

Circulating tumor DNA for prognosis assessment and postoperative management after curative-intent resection of colorectal liver metastases

Reinert, T., Petersen, L. M. S., Henriksen, T. V., Larsen, M. Ø., Rasmussen, M. H., Johansen, A. F. B., Øgaard, N., Knudsen, M., Nordentoft, I. K., Vang, S., Krag, S. R. P., Knudsen, A. R., Mortensen, F. V. & Andersen, C. L., May 2022, In: International Journal of Cancer. 150, 9, p. 1537-1548 12 p.

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Open Access

33 Citations (Scopus)

Comparing single-target and multitarget approaches for postoperative circulating tumour DNA detection in stage II-III colorectal cancer patients

Henriksen, T. V., Reinert, T., Rasmussen, M. H., Demuth, C., Løve, U. S., Madsen, A. H., Gotschalck, K. A., Iversen, L. H. & Andersen, C. L., Oct 2022, In: Molecular Oncology. 16, 20, p. 3654-3665 12 p.

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Open Access

13 Citations (Scopus)

Error Characterization and Statistical Modeling Improves Circulating Tumor DNA Detection by Droplet Digital PCR

Henriksen, T. V., Drue, S. O., Frydendahl, A., Demuth, C., Rasmussen, M. H., Reinert, T., Pedersen, J. S. & Andersen, C. L., May 2022, In: Clinical Chemistry. 68, 5, p. 657-667 11 p.

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15 Citations (Scopus)

47 Downloads (Pure)

2020

MethCORR modelling of methylomes from formalin-fixed paraffin-embedded tissue enables characterization and prognostication of colorectal cancer

Mattesen, T. B., Rasmussen, M. H., Sandoval, J., Ongen, H., Árnadóttir, S. S., Gladov, J., Martinez-Cardus, A., Castro de Moura, M., Madsen, A. H., Laurberg, S., Dermitzakis, E. T., Esteller, M., Andersen, C. L. & Bramsen, J. B., Dec 2020, In: Nature Communications. 11, 2025.

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Open Access

6 Citations (Scopus)

2019

Analysis of Plasma Cell-Free DNA by Ultradeep Sequencing in Patients With Stages I to III Colorectal Cancer

Reinert, T., Henriksen, T. V., Christensen, E., Sharma, S., Salari, R., Sethi, H., Knudsen, M., Nordentoft, I., Wu, H.-T., Tin, A. S., Heilskov Rasmussen, M., Vang, S., Shchegrova, S., Frydendahl Boll Johansen, A., Srinivasan, R., Assaf, Z., Balcioglu, M., Olson, A., Dashner, S. & Hafez, D. & 18 others, Navarro, S., Goel, S., Rabinowitz, M., Billings, P., Sigurjonsson, S., Dyrskjøt, L., Swenerton, R., Aleshin, A., Laurberg, S., Husted Madsen, A., Kannerup, A.-S., Stribolt, K., Palmelund Krag, S., Iversen, L. H., Gotschalck Sunesen, K., Lin, C.-H. J., Zimmermann, B. G. & Lindbjerg Andersen, C., 1 Aug 2019, In: JAMA Oncology. 5, 8, p. 1124-1131 8 p.

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628 Citations (Scopus)

152 Downloads (Pure)

Correlation between early dynamics in circulating tumour DNA and outcome from FOLFIRI treatment in metastatic colorectal cancer

Lyskjær, I., Kronborg, C. S., Rasmussen, M. H., Sørensen, B. S., Demuth, C., Rosenkilde, M., Johansen, A. F. B., Knudsen, M., Vang, S., Krag, S. R. P., Spindler, K. L. G. & Andersen, C. L., 8 Aug 2019, In: Scientific Reports. 9, 1, 10 p., 11542.

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Open Access

31 Citations (Scopus)

Correlation between early dynamics in circulating tumour DNA and outcome from FOLFIRI treatment in metastatic colorectal cancer

Lyskjær, I., Kronborg, C. S., Rasmussen, M. H., Sørensen, B. S., Demuth, C., Rosenkilde, M., Johansen, A. F. B., Knudsen, M., Vang, S., Krag, S. R. P., Spindler, K.-L. G. & Andersen, C. L., 8 Aug 2019, In: Scientific Reports. 9, 1, p. 11542

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Novel DNA methylation biomarkers show high sensitivity and specificity for blood-based detection of colorectal cancer- A clinical biomarker discovery and validation study

Jensen, S. Ø., Øgaard, N., Ørntoft, M. B. W., Rasmussen, M. H., Bramsen, J. B., Kristensen, H., Mouritzen, P., Madsen, M. R., Madsen, A. H., Sunesen, K. G., Iversen, L. H., Laurberg, S., Christensen, I. J., Nielsen, H. J. & Andersen, C. L., 2019, In: Clinical Epigenetics. 11, 1, 14 p., 158.

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Open Access

106 Citations (Scopus)

Validation of computational determination of microsatellite status using whole exome sequencing data from colorectal cancer patients

Johansen, A. F. B., Kassentoft, C. G., Knudsen, M., Laursen, M. B., Madsen, A. H., Iversen, L. H., Sunesen, K. G., Rasmussen, M. H. & Andersen, C. L., 21 Oct 2019, In: BMC Cancer. 19, 1, 8 p., 971.

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Open Access

22 Citations (Scopus)

2017

A genetically inducible porcine model of intestinal cancer

Callesen, M. M., Árnadóttir, S. S., Lyskjær, I., Ørntoft, M.-B. W., Høyer, S., Dagnæs-Hansen, F., Liu, Y., Li, R., Callesen, H., Rasmussen, M. H., Berthelsen, M. F., Thomsen, M. K., Schweiger, P. J., Jensen, K. B., Laurberg, S., Ørntoft, T. F., Jakobsen, J. E. & Andersen, C. L., Nov 2017, In: Molecular Oncology. 11, 11, p. 1616-1629 14 p.

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32 Citations (Scopus)

300 Downloads (Pure)

Molecular-Subtype-Specific Biomarkers Improve Prediction of Prognosis in Colorectal Cancer

Bramsen, J. B., Rasmussen, M. H., Ongen, H., Mattesen, T. B., Ørntoft, M.-B. W., Árnadóttir, S. S., Sandoval, J., Laguna, T., Vang, S., Øster, B., Lamy, P., Madsen, M. R., Laurberg, S., Esteller, M., Dermitzakis, E. T., Ørntoft, T. F. & Andersen, C. L., 9 May 2017, In: Cell Reports. 19, 6, p. 1268-1280 13 p.

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84 Citations (Scopus)

2016

miR-625-3p regulates oxaliplatin resistance by targeting MAP2K6-p38 signalling in human colorectal adenocarcinoma cells

Rasmussen, M. H., Lyskjær, I., Jersie-Christensen, R. R., Tarpgaard, L. S., Primdal-Bengtson, B., Nielsen, M. M., Pedersen, J. S., Hansen, T. P., Hansen, F., Olsen, J. V., Pfeiffer, P., Ørntoft, T. F. & Andersen, C. L., 16 Aug 2016, In: Nature Communications. 7, 15 p., 12436.

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Open Access

75 Citations (Scopus)

miRNA profiling of circulating EpCAM(+) extracellular vesicles: promising biomarkers of colorectal cancer

Ostenfeld, M. S., Jensen, S. G., Jeppesen, D. K., Christensen, L.-L., Thorsen, S. B., Stenvang, J., Hvam, M. L., Thomsen, A. R., Mouritzen, P., Rasmussen, M. H., Nielsen, H. J., Ørntoft, T. F. & Andersen, C. L., 1 Jan 2016, In: Journal of Extracellular Vesicles. 5, 1, p. 31488 31488.

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Open Access

94 Citations (Scopus)

Putting a brake on stress signaling - miR-625-3p as a biomarker for choice of therapy in colorectal cancer

Lyskjær, I., Rasmussen, M. H. & Andersen, C. L., Nov 2016, In: Epigenomics. 8, 11, p. 1449-1452 4 p.

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Open Access

7 Citations (Scopus)

2015

Establishment and characterization of models of chemotherapy resistance in colorectal cancer: Towards a predictive signature of chemoresistance

Jensen, N. F., Stenvang, J., Beck, M. K., Hanáková, B., Belling, K. C., Do, K. N., Viuff, B., Nygård, S. B., Gupta, R., Rasmussen, M. H., Tarpgaard, L. S., Hansen, T. P., Budinská, E., Pfeiffer, P., Bosman, F., Tejpar, S., Roth, A., Delorenzi, M., Andersen, C. L. & Rømer, M. U. & 2 others, Brünner, N. & Moreira, J. M. A., Jun 2015, In: Molecular Oncology. 9, 6, p. 1169-85 17 p.

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94 Citations (Scopus)

The potential role of Alu Y in the development of resistance to SN38 (Irinotecan) or oxaliplatin in colorectal cancer

Lin, X., Stenvang, J., Rasmussen, M. H., Zhu, S., Jensen, N. F., Tarpgaard, L. S., Yang, G., Belling, K., Andersen, C. L., Li, J., Bolund, L. & Brünner, N., 2015, In: B M C Genomics. 16, p. 404

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77 Citations (Scopus)

2014

Cellular Disposal of miR23b by RAB27-Dependent Exosome Release Is Linked to Acquisition of Metastatic Properties

Ostenfeld, M. S., Jeppesen, D. K., Laurberg, J. R., Boysen, A. T., Bramsen, J. B., Primdal-Bengtson, B., Hendrix, A., Lamy, P., Dagnaes-Hansen, F., Rasmussen, M. H., Bui, K. H., Fristrup, N., Christensen, E. I., Nordentoft, I., Morth, J. P., Jensen, J. B., Pedersen, J. S., Beck, M., Theodorescu, D. & Borre, M. & 3 others, Howard, K. A., Dyrskjøt, L. & Orntoft, T. F., 26 Sept 2014, In: Cancer Research. 74, 20, p. 5758-5771

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251 Citations (Scopus)

Functional screening identifies miRNAs influencing apoptosis and proliferation in colorectal cancer

Christensen, L. L., Holm, A., Rantala, J., Kallioniemi, O., Rasmussen, M. H., Ostenfeld, M. S., Dagnaes-Hansen, F., Øster, B., Schepeler, T., Tobiasen, H., Thorsen, K., Sieber, O. M., Gibbs, P., Lamy, P., Hansen, T. F., Jakobsen, A., Riising, E. M., Helin, K., Lubinski, J. & Hagemann-Madsen, R. & 3 others, Laurberg, S., Ørntoft, T. F. & Andersen, C. L., 2014, In: PLOS ONE. 9, 6, p. e96767

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52 Citations (Scopus)

Putative cis-regulatory drivers in colorectal cancer

Ongen, H., Andersen, C. L., Bramsen, J. B., Oster, B., Rasmussen, M. H., Ferreira, P. G., Sandoval, J., Vidal, E., Whiffin, N., Planchon, A., Padioleau, I., Bielser, D., Romano, L., Tomlinson, I., Houlston, R. S., Esteller, M., Orntoft, T. F. & Dermitzakis, E. T., 7 Aug 2014, In: Nature. 512, 7512, p. 87-90 4 p.

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115 Citations (Scopus)

2013

Functional screening identifies miRNAs that induce apoptosis and/or inhibit proliferation in colorectal cancer

Christensen, L. L., Holm, A., Schepeler, T., Rantala, J., Kallioniemi, O., Thorsen, K., Rasmussen, M. H., Birkenkamp-Demtröder, K., Sieber, O. M., Gibbs, P., Lamy, P., Ørntoft, T. F. & Andersen, C. L., 2013.

Research output: Contribution to conference › Poster › Research › peer-review

High expression of microRNA-625-3p is associated with poor response to first-line oxaliplatin based treatment of metastatic colorectal cancer

Rasmussen, M. H., Jensen, N., Tarpgaard, L. S., Qvortrup, C., Rømer, M. U. K., Stenvang, J., Hansen, T., Christensen, L. L., Lindebjerg, J., Hansen, F., Jensen, B. V., Hansen, T. F., Pfeiffer, P., Brünner, N., Orntoft, T. F. & Andersen, C. L., Jun 2013, In: Molecular Oncology. 7, 3, p. 637-646 10 p.

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88 Citations (Scopus)

MiRNA-362-3p induces cell cycle arrest through targeting of E2F1, USF2 and PTPN1 and is associated with recurrence of colorectal cancer

Christensen, L. L., Tobiasen, H., Holm, A., Schepeler, T., Ostenfeld, M. S., Thorsen, K., Rasmussen, M. H., Birkenkamp-Demtröder, K., Sieber, O. M., Gibbs, P., Lubinski, J., Lamy, P., Laurberg, S., Øster, B., Hansen, K. Q., Hagemann-Madsen, R., Byskov, K., Ørntoft, T. F. & Andersen, C. L., Jul 2013, In: International Journal of Cancer. 133, 1, p. 67-78 12 p.

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93 Citations (Scopus)

2011

Evaluation of two commercial global miRNA expression profiling platforms for detection of less abundant miRNAs

Jensen, S. G., Lamy, P., Rasmussen, M. H., Ostenfeld, M. S., Andersen, L. D., Orntoft, T. F. & Andersen, C. L., 2011, In: B M C Genomics. 12, p. 435

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133 Citations (Scopus)

Tumor-specific usage of alternative transcription start sites in colorectal cancer identified by genome-wide exon array analysis

Thorsen, K., Schepeler, T., Øster, B., Rasmussen, M. H., Vang, S., Wang, K., Hansen, K. Q., Lamy, P., Pedersen, J. S., Eller, A. Ø., Mansilla, F., Laurila, K., Wiuf, C. H., Laurberg, S., Dyrskjot, L., Orntoft, T. F. & Andersen, C. L., 14 Oct 2011, In: B M C Genomics. 12, 1, p. 505

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59 Citations (Scopus)

2010

Alternative splicing of SLC39A14 in colorectal cancer is regulated by the Wnt pathway

Thorsen, K., Mansilla, F., Schepler, T., Øster, B., Rasmussen, M. H., Andersen, L. D., Karni, R., Akerman, M., Krainer, A. R., Laurberg, S., Andersen, C. L. & Ørntoft, T. F., 2010, In: Molecular and Cellular Proteomics.

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77 Citations (Scopus)

Antisense transcription in gammaretroviruses as a mechanism of insertional activation of host genes

Rasmussen, M. H., Ballarín-González, B., Liu, J., Lassen, L. B., Füchtbauer, A., Füchtbauer, E.-M., Nielsen, A. L. & Pedersen, F. S., 2010, In: Journal of Virology. 84, 8, p. 3780-3788 9 p.

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27 Citations (Scopus)

2009

Activation of alternative Jdp2 promoters and functional protein isoforms in T-cell lymphomas by retroviral insertion mutagenesis

Rasmussen, M. H., Wang, B., Wabl, M., Nielsen, A. L. & Pedersen, F. S., 2009, In: Nucleic Acids Research. 37, 14, p. 4657-71 14 p.

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21 Citations (Scopus)

Activation of the brain-specific neurogranin gene in murine T-cell lymphomas by proviral insertional mutagenesis

Nielsen, A. A., Kjartansdóttir, K. R., Rasmussen, M. H., Sørensen, A. B., Wang, B., Wabl, M. & Pedersen, F. S., 2009, In: Gene. p. 55 - 62 8 p.

Research output: Contribution to journal/Conference contribution in journal/Contribution to newspaper › Journal article › Research › peer-review

14 Citations (Scopus)

Retroviral tagging of cancer genes in mouse models

Rasmussen, M. H., 2009, Aarhus Universitet.

Research output: Book/anthology/dissertation/report › Ph.D. thesis

2005

Tumor model-specific proviral insertional mutagenesis of the Fos/Jdp2/Batf locus.

Rasmussen, M. H., Sørensen, A. B., Morris, D. W., Dutra, J. C., Engelhard, E. K., Wang, C. L., Schmidt, J. & Pedersen, F. S., 2005, In: Virology. 337, 2, p. 353-64 11 p.

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25 Citations (Scopus)

Mads Heilskov Rasmussen

Research output

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