Juraj Bergman

Juraj Bergman

 https://orcid.org/0000-0002-9415-2747

  • Universitetsbyen 81

    8000 Aarhus C

    Denmark

  • Ny Munkegade 116

    8000 Aarhus C

    Denmark

20212024

Research activity per year

  • 10 Journal article
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  • 2024

    Functional traits—not nativeness—shape the effects of large mammalian herbivores on plant communities

    Lundgren, E. J., Bergman, J., Trepel, J., Roux, E. L., Monsarrat, S., Kristensen, J. A., Pedersen, R. Ø., Pereyra, P., Tietje, M. & Svenning, J. C., 20 Feb 2024, In: Science. 383, 6682, p. 531-537 7 p.

    Research output: Contribution to journal/Conference contribution in journal/Contribution to newspaper › Journal article › Research › peer-review

    25 Citations (Scopus)

  • Identification of constrained sequence elements across 239 primate genomes

    Kuderna, L. F. K., Ulirsch, J. C., Rashid, S., Ameen, M., Sundaram, L., Hickey, G., Cox, A. J., Gao, H., Kumar, A., Aguet, F., Christmas, M. J., Clawson, H., Haeussler, M., Janiak, M. C., Kuhlwilm, M., Orkin, J. D., Bataillon, T., Manu, S., Valenzuela, A. & Bergman, J. & 72 others, Rouselle, M., Silva, F. E., Agueda, L., Blanc, J., Gut, M., de Vries, D., Goodhead, I., Harris, R. A., Raveendran, M., Jensen, A., Chuma, I. S., Horvath, J. E., Hvilsom, C., Juan, D., Frandsen, P., Schraiber, J. G., de Melo, F. R., Bertuol, F., Byrne, H., Sampaio, I., Farias, I., Valsecchi, J., Messias, M., da Silva, M. N. F., Trivedi, M., Rossi, R., Hrbek, T., Andriaholinirina, N., Rabarivola, C. J., Zaramody, A., Jolly, C. J., Phillips-Conroy, J., Wilkerson, G., Abee, C., Simmons, J. H., Fernandez-Duque, E., Kanthaswamy, S., Shiferaw, F., Wu, D., Zhou, L., Shao, Y., Zhang, G., Keyyu, J. D., Knauf, S., Le, M. D., Lizano, E., Merker, S., Navarro, A., Nadler, T., Khor, C. C., Lee, J., Tan, P., Lim, W. K., Kitchener, A. C., Zinner, D., Gut, I., Melin, A. D., Guschanski, K., Schierup, M. H., Beck, R. M. D., Karakikes, I., Wang, K. C., Umapathy, G., Roos, C., Boubli, J. P., Siepel, A., Kundaje, A., Paten, B., Lindblad-Toh, K., Rogers, J., Marques Bonet, T. & Farh, K. K. H., 25 Jan 2024, In: Nature. 625, 7996, p. 735-742 8 p.

    Research output: Contribution to journal/Conference contribution in journal/Contribution to newspaper › Journal article › Research › peer-review

    Open Access
    20 Citations (Scopus)

  • Inference of genomic landscapes using ordered Hidden Markov Models with emission densities (oHMMed)

    Vogl, C., Karapetiants, M., Yıldırım, B., Kjartansdóttir, H., Kosiol, C., Bergman, J., Majka, M. & Mikula, L. C., Apr 2024, In: BMC Bioinformatics. 25, 1, 151.

    Research output: Contribution to journal/Conference contribution in journal/Contribution to newspaper › Journal article › Research › peer-review

    Open Access
  • 2023

    A global catalog of whole-genome diversity from 233 primate species

    Kuderna, L. F. K., Gao, H., Janiak, M. C., Kuhlwilm, M., Orkin, J. D., Bataillon, T., Manu, S., Valenzuela, A., Bergman, J., Rousselle, M., Silva, F. E., Agueda, L., Blanc, J., Gut, M., de Vries, D., Goodhead, I., Harris, R. A., Raveendran, M., Jensen, A. & Chuma, I. S. & 55 others, Horvath, J. E., Hvilsom, C., Juan, D., Frandsen, P., Schraiber, J. G., de Melo, F. R., Bertuol, F., Byrne, H., Sampaio, I., Farias, I., Valsecchi, J., Messias, M., da Silva, M. N. F., Trivedi, M., Rossi, R., Hrbek, T., Andriaholinirina, N., Rabarivola, C. J., Zaramody, A., Jolly, C. J., Phillips-Conroy, J., Wilkerson, G., Abee, C., Simmons, J. H., Fernandez-Duque, E., Kanthaswamy, S., Shiferaw, F., Wu, D., Zhou, L., Shao, Y., Zhang, G., Keyyu, J. D., Knauf, S., Le, M. D., Lizano, E., Merker, S., Navarro, A., Nadler, T., Khor, C. C., Lee, J., Tan, P., Lim, W. K., Kitchener, A. C., Zinner, D., Gut, I., Melin, A. D., Guschanski, K., Schierup, M. H., Beck, R. M. D., Umapathy, G., Roos, C., Boubli, J. P., Rogers, J., Farh, K. K. H. & Bonet, T. M., Jun 2023, In: Science. 380, 6648, p. 906-913 8 p.

    Research output: Contribution to journal/Conference contribution in journal/Contribution to newspaper › Journal article › Research › peer-review

    67 Citations (Scopus)

  • Eighty million years of rapid evolution of the primate Y chromosome

    Zhou, Y., Zhan, X., Jin, J., Zhou, L., Bergman, J., Li, X., Rousselle, M. M. C., Belles, M. R., Zhao, L., Fang, M., Chen, J., Fang, Q., Kuderna, L., Marques-Bonet, T., Kitayama, H., Hayakawa, T., Yao, Y. G., Yang, H., Cooper, D. N. & Qi, X. & 3 others, Wu, D. D., Schierup, M. H. & Zhang, G., Jul 2023, In: Nature Ecology & Evolution. 7, 7, p. 1114-1130 17 p.

    Research output: Contribution to journal/Conference contribution in journal/Contribution to newspaper › Journal article › Research › peer-review

    12 Citations (Scopus)

  • Genome-wide coancestry reveals details of ancient and recent male-driven reticulation in baboons

    Sørensen, E. F., Harris, R. A., Zhang, L., Raveendran, M., Kuderna, L. F. K., Walker, J. A., Storer, J. M., Kuhlwilm, M., Fontsere, C., Seshadri, L., Bergey, C. M., Burrell, A. S., Bergman, J., Phillips-Conroy, J. E., Shiferaw, F., Chiou, K. L., Chuma, I. S., Keyyu, J. D., Fischer, J. & Gingras, M. C. & 12 others, Salvi, S., Doddapaneni, H., Schierup, M. H., Batzer, M. A., Jolly, C. J., Knauf, S., Zinner, D., Farh, K. K. H., Marques-Bonet, T., Munch, K., Roos, C. & Rogers, J., Jun 2023, In: Science (New York, N.Y.). 380, 6648, eabn8153.

    Research output: Contribution to journal/Conference contribution in journal/Contribution to newspaper › Journal article › Research › peer-review

    18 Citations (Scopus)

  • The landscape of tolerated genetic variation in humans and primates

    Gao, H., Hamp, T., Ede, J., Schraiber, J. G., McRae, J., Singer-Berk, M., Yang, Y., Dietrich, A. S. D., Fiziev, P. P., Kuderna, L. F. K., Sundaram, L., Wu, Y., Adhikari, A., Field, Y., Chen, C., Batzoglou, S., Aguet, F., Lemire, G., Reimers, R. & Balick, D. & 77 others, Janiak, M. C., Kuhlwilm, M., Orkin, J. D., Manu, S., Valenzuela, A., Bergman, J., Rousselle, M., Silva, F. E., Agueda, L., Blanc, J., Gut, M., de Vries, D., Goodhead, I., Harris, R. A., Raveendran, M., Jensen, A., Chuma, I. S., Horvath, J. E., Hvilsom, C., Juan, D., Frandsen, P., de Melo, F. R., Bertuol, F., Byrne, H., Sampaio, I., Farias, I., do Amaral, J. V., Messias, M., da Silva, M. N. F., Trivedi, M., Rossi, R., Hrbek, T., Andriaholinirina, N., Rabarivola, C. J., Zaramody, A., Jolly, C. J., Phillips-Conroy, J., Wilkerson, G., Abee, C., Simmons, J. H., Fernandez-Duque, E., Kanthaswamy, S., Shiferaw, F., Wu, D., Zhou, L., Shao, Y., Zhang, G., Keyyu, J. D., Knauf, S., Le, M. D., Lizano, E., Merker, S., Navarro, A., Bataillon, T., Nadler, T., Khor, C. C., Lee, J., Tan, P., Lim, W. K., Kitchener, A. C., Zinner, D., Gut, I., Melin, A., Guschanski, K., Schierup, M. H., Beck, R. M. D., Umapathy, G., Roos, C., Boubli, J. P., Lek, M., Sunyaev, S., O'Donnell-Luria, A., Rehm, H. L., Xu, J., Rogers, J., Marques-Bonet, T. & Farh, K. K. H., Jun 2023, In: Science (New York, N.Y.). 380, 6648, abn8197.

    Research output: Contribution to journal/Conference contribution in journal/Contribution to newspaper › Journal article › Research › peer-review

    Open Access
    51 Citations (Scopus)

  • Worldwide Late Pleistocene and Early Holocene population declines in extant megafauna are associated with Homo sapiens expansion rather than climate change

    Bergman, J., Pedersen, R., Lundgren, E. J., Lemoine, R. T., Monsarrat, S., Pearce, E. A., Schierup, M. H. & Svenning, J. C., Dec 2023, In: Nature Communications. 14, 1, 7679.

    Research output: Contribution to journal/Conference contribution in journal/Contribution to newspaper › Journal article › Research › peer-review

    Open Access
    21 Citations (Scopus)
  • 2022

    Evolutionary dynamics of pseudoautosomal region 1 in humans and great apes

    Bergman, J. & Schierup, M. H., Oct 2022, In: Genome Biology. 23, 215.

    Research output: Contribution to journal/Conference contribution in journal/Contribution to newspaper › Journal article › Research › peer-review

    Open Access
    4 Citations (Scopus)
  • 2021

    Evolutionary and biomedical insights from a marmoset diploid genome assembly

    Yang, C., Zhou, Y., Marcus, S., Formenti, G., Bergeron, L. A., Song, Z., Bi, X., Bergman, J., Rousselle, M. M. C., Zhou, C., Zhou, L., Deng, Y., Fang, M., Xie, D., Zhu, Y., Tan, S., Mountcastle, J., Haase, B., Balacco, J. & Wood, J. & 13 others, Chow, W., Rhie, A., Pippel, M., Fabiszak, M. M., Koren, S., Fedrigo, O., Freiwald, W. A., Howe, K., Yang, H., Phillippy, A. M., Schierup, M. H., Jarvis, E. D. & Zhang, G., Jun 2021, In: Nature. 594, 7862, p. 227-233 7 p.

    Research output: Contribution to journal/Conference contribution in journal/Contribution to newspaper › Journal article › Research › peer-review

    Open Access
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    34 Citations (Scopus)
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