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Esben Meldgaard Høgh Quistgaard

Up, Down, and Around: Identifying Recurrent Interactions Within and Between Super-secondary Structures in β-Propellers

Research output: Contribution to book/anthology/report/proceedingBook chapterResearch

Standard

Up, Down, and Around : Identifying Recurrent Interactions Within and Between Super-secondary Structures in β-Propellers. / Thirup, Søren Skou; Gupta, Vikas; Quistgaard, Esben Meldgaard Høgh.

Protein Supersecondary Structures. ed. / Alexander E Kister. Vol. 932 Springer, 2013. p. 35-50 (Methods in Molecular Biology).

Research output: Contribution to book/anthology/report/proceedingBook chapterResearch

Harvard

Thirup, SS, Gupta, V & Quistgaard, EMH 2013, Up, Down, and Around: Identifying Recurrent Interactions Within and Between Super-secondary Structures in β-Propellers. in AE Kister (ed.), Protein Supersecondary Structures. vol. 932, Springer, Methods in Molecular Biology, pp. 35-50. https://doi.org/10.1007/978-1-62703-065-6_3

APA

Thirup, S. S., Gupta, V., & Quistgaard, E. M. H. (2013). Up, Down, and Around: Identifying Recurrent Interactions Within and Between Super-secondary Structures in β-Propellers. In A. E. Kister (Ed.), Protein Supersecondary Structures (Vol. 932, pp. 35-50). Springer. Methods in Molecular Biology https://doi.org/10.1007/978-1-62703-065-6_3

CBE

Thirup SS, Gupta V, Quistgaard EMH. 2013. Up, Down, and Around: Identifying Recurrent Interactions Within and Between Super-secondary Structures in β-Propellers. Kister AE, editor. In Protein Supersecondary Structures. Springer. pp. 35-50. (Methods in Molecular Biology). https://doi.org/10.1007/978-1-62703-065-6_3

MLA

Vancouver

Thirup SS, Gupta V, Quistgaard EMH. Up, Down, and Around: Identifying Recurrent Interactions Within and Between Super-secondary Structures in β-Propellers. In Kister AE, editor, Protein Supersecondary Structures. Vol. 932. Springer. 2013. p. 35-50. (Methods in Molecular Biology). https://doi.org/10.1007/978-1-62703-065-6_3

Author

Thirup, Søren Skou ; Gupta, Vikas ; Quistgaard, Esben Meldgaard Høgh. / Up, Down, and Around : Identifying Recurrent Interactions Within and Between Super-secondary Structures in β-Propellers. Protein Supersecondary Structures. editor / Alexander E Kister. Vol. 932 Springer, 2013. pp. 35-50 (Methods in Molecular Biology).

Bibtex

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title = "Up, Down, and Around: Identifying Recurrent Interactions Within and Between Super-secondary Structures in β-Propellers",
abstract = "The examination and analysis of super-secondary structures or other specific structural patterns associated with particular functions, sequence motifs, or structural contexts require that the set of structures examined shares the same feature. This seems obvious but in practice this may often present problems such as identifying complete sets of data avoiding false positives. In the case of the β-propeller structures the symmetry of the propeller creates problems for many structure similarity search programs. Here we present a procedure that will identify propeller structures in PDB and assign them to the different N-propeller types. In addition we outline methods to examine similarities and differences within and between the four stranded up-and-down blades of the β-propeller.",
author = "Thirup, {S{\o}ren Skou} and Vikas Gupta and Quistgaard, {Esben Meldgaard H{\o}gh}",
year = "2013",
doi = "10.1007/978-1-62703-065-6_3",
language = "English",
isbn = "978-1-62703-064-9",
volume = "932",
series = "Methods in Molecular Biology",
publisher = "Springer",
pages = "35--50",
editor = "Kister, {Alexander E}",
booktitle = "Protein Supersecondary Structures",

}

RIS

TY - CHAP

T1 - Up, Down, and Around

T2 - Identifying Recurrent Interactions Within and Between Super-secondary Structures in β-Propellers

AU - Thirup, Søren Skou

AU - Gupta, Vikas

AU - Quistgaard, Esben Meldgaard Høgh

PY - 2013

Y1 - 2013

N2 - The examination and analysis of super-secondary structures or other specific structural patterns associated with particular functions, sequence motifs, or structural contexts require that the set of structures examined shares the same feature. This seems obvious but in practice this may often present problems such as identifying complete sets of data avoiding false positives. In the case of the β-propeller structures the symmetry of the propeller creates problems for many structure similarity search programs. Here we present a procedure that will identify propeller structures in PDB and assign them to the different N-propeller types. In addition we outline methods to examine similarities and differences within and between the four stranded up-and-down blades of the β-propeller.

AB - The examination and analysis of super-secondary structures or other specific structural patterns associated with particular functions, sequence motifs, or structural contexts require that the set of structures examined shares the same feature. This seems obvious but in practice this may often present problems such as identifying complete sets of data avoiding false positives. In the case of the β-propeller structures the symmetry of the propeller creates problems for many structure similarity search programs. Here we present a procedure that will identify propeller structures in PDB and assign them to the different N-propeller types. In addition we outline methods to examine similarities and differences within and between the four stranded up-and-down blades of the β-propeller.

U2 - 10.1007/978-1-62703-065-6_3

DO - 10.1007/978-1-62703-065-6_3

M3 - Book chapter

C2 - 22987345

SN - 978-1-62703-064-9

VL - 932

T3 - Methods in Molecular Biology

SP - 35

EP - 50

BT - Protein Supersecondary Structures

A2 - Kister, Alexander E

PB - Springer

ER -