Center for Quantitative Genetics and Genomics

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Emre Karaman

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  1. 2022
  2. Published

    XSim Version 2 : Simulation of Modern Breeding Programs. / Chen, Chunpeng James; Garrick, Dorian; Fernando, Rohan; Karaman, Emre; Stricker, Chris; Keehan, Michael; Cheng, Hao.

    In: G3: Genes, Genomes, Genetics, Vol. 12, No. 4, 04.2022.

    Research output: Contribution to journal/Conference contribution in journal/Contribution to newspaper › Journal article › Research › peer-review

  3. Published

    Genomic prediction in Nordic Red dairy cattle considering breed origin of alleles. / Guillenea, Ana; Su, Guosheng; Lund, Mogens Sandø; Karaman, Emre.

    In: Journal of Dairy Science, Vol. 105, No. 3, 03.2022, p. 2426-2438.

    Research output: Contribution to journal/Conference contribution in journal/Contribution to newspaper › Journal article › Research › peer-review

  4. 2021
  5. Published

    Breed of origin of alleles and genomic predictions for crossbred dairy cows. / Eiríksson, Jón H.; Karaman, Emre; Su, Guosheng; Christensen, Ole Fredslund.

    In: Genetics Selection Evolution, Vol. 53, 84, 11.2021.

    Research output: Contribution to journal/Conference contribution in journal/Contribution to newspaper › Journal article › Research › peer-review

  6. Published

    MeSCoT : The tool for quantitative trait simulation through the mechanistic modeling of genes' regulatory interactions. / Milkevych, Viktor; Karaman, Emre; Sahana, Goutam; Janss, Luc; Cai, Zexi; Lund, Mogens Sandø.

    In: G3 (Bethesda, Md.), Vol. 11, No. 7, jkab133, 07.2021.

    Research output: Contribution to journal/Conference contribution in journal/Contribution to newspaper › Journal article › Research › peer-review

  7. Published

    Genomic prediction using a reference population of multiple pure breeds and admixed individuals. / Karaman, Emre; Su, Guosheng; Croue, Iola; Lund, Mogens S.

    In: Genetics Selection Evolution, Vol. 53, 46, 05.2021.

    Research output: Contribution to journal/Conference contribution in journal/Contribution to newspaper › Journal article › Research › peer-review

  8. 2020
  9. Published

    Genomic prediction using data from multiple pure breeds and crossbreds. / Karaman, Emre; Su, Guosheng; Croue, Iola; Lund, Mogens Sandø.

    2020. Abstract from 71st Annual Meeting of European Federation of Animal Science.

    Research output: Contribution to conference › Conference abstract for conference › Research › peer-review

  10. Published

    Genomic prediction using purebred and crossbred individuals. / Karaman, Emre; Su, Guosheng; Croue, Iola; Lund, Mogens Sandø.

    In: GenTORE Newsletter, No. 4, 12.2020, p. 13-16.

    Research output: Contribution to journal/Conference contribution in journal/Contribution to newspaper › Journal article › Research › peer-review

  11. Published

    Imputation for sequencing variants preselected to a customized low-density chip. / Liu, Aoxing; Lund, Mogens Sandø; Boichard, Didier; Mao, Xiaowei; Karaman, Emre; Fritz, Sebastien; Aamand, Gert Pedersen; Wang, Yachun; Su, Guosheng.

    In: Scientific Reports, Vol. 10, 9524, 12.2020.

    Research output: Contribution to journal/Conference contribution in journal/Contribution to newspaper › Journal article › Research › peer-review

  12. Published

    Genomic prediction using a multi-breed reference data of purebred and admixed populations. / Karaman, Emre; Su, Guosheng; Croue, Iola; Lund, Mogens Sandø.

    2020. Abstract from 6th International Conference of Quantitative Genetics, Brisbane, Australia.

    Research output: Contribution to conference › Conference abstract for conference › Research › peer-review

  13. Published

    Correction : Multi-trait single-step genomic prediction accounting for heterogeneous (co)variances over the genome . / Karaman, Emre; Lund, Mogens S.; Su, Guosheng.

    In: Heredity, Vol. 124, No. 4, 04.2020, p. 618.

    Research output: Contribution to journal/Conference contribution in journal/Contribution to newspaper › Comment/debate/letter to the editor › Research › peer-review

  14. Published

    Multi-trait single-step genomic prediction accounting for heterogeneous (co)variances over the genome. / Karaman, Emre; Lund, Mogens Sandø; Su, Guosheng.

    In: Heredity, Vol. 124, No. 2, 02.2020, p. 274-287.

    Research output: Contribution to journal/Conference contribution in journal/Contribution to newspaper › Journal article › Research › peer-review

  15. Published

    Genomic prediction for crossbred cows by combining marker effects estimated in purebreds. / Eiriksson, Jon Hjalti; Karaman, Emre; Su, Guosheng; Christensen, Ole Fredslund.

    2020. Abstract from 71st Annual Meeting of European Federation of Animal Science.

    Research output: Contribution to conference › Conference abstract for conference › Research › peer-review

  16. Published

    Weighted single-step genomic best linear unbiased prediction integrating variants selected from sequencing data by association and bioinformatics analyses. / Liu, Aoxing; Lund, Mogens Sandø; Boichard, Didier; Karaman, Emre; Guldbrandtsen, Bernt; Fritz, Sebastien; Aamand, Gert Pedersen; Nielsen, Ulrik Sander; Sahana, Goutam; Wang, Yachun; Su, Guosheng.

    In: Genetics Selection Evolution, Vol. 52, No. 1, 48, 2020.

    Research output: Contribution to journal/Conference contribution in journal/Contribution to newspaper › Journal article › Research › peer-review

  17. 2019
  18. Published

    Pooled genotyping strategies for the rapid construction of genomic reference populations. / Alexandre, Pâmela; Porto-Neto, Laercio; Karaman, Emre; Lehnert, Sigrid; Reverter, Antonio.

    In: Journal of Animal Science, Vol. 97, No. 12, 12.2019, p. 4761– 4769.

    Research output: Contribution to journal/Conference contribution in journal/Contribution to newspaper › Journal article › Research › peer-review

  19. Published

    Improvement of genomic prediction by integrating additional single nucleotide polymorphisms selected from imputed whole genome sequencing data. / Liu, Aoxing; Lund, Mogens Sandø; Boichard, Didier A; Karaman, Emre; Fritz, Sébastien; Aamand, Gert Pedersen; Nielsen, Ulrik Sander; Wang, Yachun; Su, Guosheng.

    In: Heredity, 2019.

    Research output: Contribution to journal/Conference contribution in journal/Contribution to newspaper › Journal article › Research › peer-review

  20. 2018
  21. Published

    Genomic Prediction Using Multi-trait Weighted GBLUP Accounting for Heterogeneous Variances and Covariances Across the Genome. / Karaman, Emre; Lund, Mogens S; Anche, Mahlet T; Janss, Luc; Su, Guosheng.

    In: G3: Genes, Genomes, Genetics (Bethesda), Vol. 8, No. 11, 06.11.2018, p. 3549-3558.

    Research output: Contribution to journal/Conference contribution in journal/Contribution to newspaper › Journal article › Research › peer-review

  22. Published

    A two-step approach to account for heterogeneous (co)variances across the genome using GBLUP. / Karaman, Emre; Lund, Mogens Sandø; Anche, Mahlet Teka; Janss, Luc; Su, Guosheng.

    2018. Poster session presented at ICAR Conference and World Congress on Genetics Applied to Livestock Production 2018, Auckland, New Zealand.

    Research output: Contribution to conference › Poster › Research › peer-review

  23. Published

    Genomic prediction using multi-trait model with heterogeneous genomic (co)variance. / Anche, Mahlet Teka; Su, Guosheng; Karaman, Emre; Janss, Luc; Lund, Mogens Sandø.

    Proceedings of the World Congress on Genetics Applied to Livestock, 2018 . Vol. Volume Methods and Tools - Models and Computing Strategies 2 2018. p. 1-6 284.

    Research output: Contribution to book/anthology/report/proceeding › Article in proceedings › Research › peer-review

  24. Published

    Using additional single nucleotide polymorphisms selected from whole genome sequence data for genomic prediction in Danish Jersey. / Liu, Aoxing; Lund, Mogens Sandø; Boichard, Didier; Fritz, Sebastien ; Karaman, Emre; Wang, Yachun; Su, Guosheng.

    Proceedings of the World Congress on Genetics Applied to Livestock Production, 2018. 2018. 586.

    Research output: Contribution to book/anthology/report/proceeding › Article in proceedings › Research › peer-review

  25. 2017
  26. Published

    Weighted Multi-Trait GBLUP : Using (co)variance estimates from Bayesian models. / Karaman, Emre; Lund, Mogens Sandø; Anche, Mahlet Teka; Janss, Luc; Su, Guosheng.

    2017. Poster session presented at 5th Annual GenSAP Meeting, 15-16 November 2017, Billund, Denmark.

    Research output: Contribution to conference › Poster › Research