Aarhus University Seal / Aarhus Universitets segl

Christian Nørgaard Storm Pedersen

  1. 2018
  2. Published

    BS-virus-finder : virus integration calling using bisulfite sequencing data. / Gao, Shengjie; Hu, Xuesong; Xu, Fengping; Gao, Changduo; Xiong, Kai; Zhao, Xiao; Chen, Haixiao; Zhao, Shancen; Wang, Mengyao; Fu, Dongke; Zhao, Xiaohui; Bai, Jie; Mao, Likai; Li, Bo; Wu, Song; Wang, Jian; Li, Shengbin; Yang, Huangming; Bolund, Lars; Pedersen, Christian N S.

    In: GigaScience, 2018.

    Research output: Contribution to journal/Conference contribution in journal/Contribution to newspaperJournal articleResearchpeer-review

  3. 2017
  4. Published

    Sequencing and de novo assembly of 150 genomes from Denmark as a population reference. / Maretty, Lasse; Jensen, Jacob Malte; Petersen, Bent; Sibbesen, Jonas Andreas; Liu, Siyang; Villesen, Palle; Skov, Laurits; Belling, Kirstine Christensen; Theil Have, Christian; Izarzugaza, José M G; Grosjean, Marie; Bork-Jensen, Jette; Grove, Jakob; Als, Thomas D; Huang, Shujia; Chang, Yuqi; Xu, Ruiqi; Ye, Weijian; Rao, Junhua; Guo, Xiaosen; Sun, Jihua; Cao, Hongzhi; Ye, Chen; van Beusekom, Johan; Espeseth, Thomas; Flindt, Esben Nørgaard; Friborg, Rune M; Halager, Anders E; Le Hellard, Stephanie; Hultman, Christina M; Lescai, Francesco; Li, Shengting; Lund, Ole; Løngren, Peter; Mailund, Thomas; Matey-Hernandez, Maria Luisa; Mors, Ole; Pedersen, Christian N S; Sicheritz-Ponten, Thomas; Sullivan, Patrick F; Syed, Ali; Westergaard, David; Yadav, Rachita; Li, Ning; Xu, Xun; Hansen, Torben; Krogh, Anders; Bolund, Lars; Sørensen, Thorkild I A; Pedersen, Oluf; Gupta, Ramneek; Rasmussen, Simon; Besenbacher, Søren; Børglum, Anders D; Wang, Jun; Eiberg, Hans; Kristiansen, Karsten; Brunak, Søren; Schierup, Mikkel Heide.

    In: Nature, Vol. 548, 03.08.2017, p. 87-91.

    Research output: Contribution to journal/Conference contribution in journal/Contribution to newspaperJournal articleResearchpeer-review

  5. Published

    Prediction of Primary Tumors in Cancers of Unknown Primary. / Søndergaard, Dan; Nielsen, Svend; Pedersen, Christian N S; Besenbacher, Søren.

    In: Journal of integrative bioinformatics, Vol. 14, No. 2, 07.07.2017.

    Research output: Contribution to journal/Conference contribution in journal/Contribution to newspaperJournal articleResearchpeer-review

  6. Published

    Discrete Structural Dynamics of Pseudo-Palindromic Motifs Control DNA Binding of Bacterial Toxin-Antitoxin Complexes. / Brodersen, Ditlev Egeskov; Bendtsen, Kirstine Louise; Xu, Kehan; Luckmann, Majbritt; Winther, Kristoffer; Shah, Shiraz A.; Pedersen, Christian N. S.

    In: F A S E B Journal, Vol. 31, No. No. 1 supplement, 777.2, 04.2017.

    Research output: Contribution to journal/Conference contribution in journal/Contribution to newspaperConference abstract in journalResearchpeer-review

  7. Published

    Toxin inhibition in C. crescentus VapBC1 is mediated by a flexible pseudo-palindromic protein motif and modulated by DNA binding. / Bendtsen, Kirstine L; Xu, Kehan; Luckmann, Majbritt; Winther, Kristoffer S; Shah, Shiraz A; Pedersen, Christian N S; Brodersen, Ditlev E.

    In: Nucleic Acids Research, Vol. 45, No. 5, 17.03.2017, p. 2875-2886.

    Research output: Contribution to journal/Conference contribution in journal/Contribution to newspaperJournal articleResearchpeer-review

  8. 2016
  9. Published

    Computational Classification of P-Type ATPases. / Søndergaard, Dan Ariel; Knudsen, Michael; Pedersen, Christian Storm.

    In: Methods in Molecular Biology, Vol. 1377, 2016, p. 493-502.

    Research output: Contribution to journal/Conference contribution in journal/Contribution to newspaperJournal articleResearchpeer-review

  10. Published

    Computational discovery of specificity-conferring sites in non-ribosomal peptide synthetases. / Knudsen, Michael; Søndergaard, Dan Ariel; Tofting-Olesen, Claus; Hansen, Frederik Teilfeldt; Brodersen, Ditlev Egeskov; Pedersen, Christian Storm.

    In: Bioinformatics, Vol. 32, No. 3, 2016, p. 325-329.

    Research output: Contribution to journal/Conference contribution in journal/Contribution to newspaperJournal articleResearchpeer-review

  11. 2015
  12. Published

    Novel variation and de novo mutation rates in population-wide de novo assembled Danish trios. / Besenbacher, Søren; Liu, Siyang; Izarzugaza, José M G; Grove, Jakob; Belling, Kirstine; Bork-Jensen, Jette; Huang, Shujia; Als, Thomas D; Li, Shengting; Yadav, Rachita; Rubio-García, Arcadio; Lescai, Francesco; Demontis, Ditte; Rao, Junhua; Ye, Weijian; Mailund, Thomas; Møllegaard Friborg, Rune; Pedersen, Christian N S; Xu, Ruiqi; Sun, Jihua; Liu, Hao; Wang, Ou; Cheng, Xiaofang; Flores, David; Rydza, Emil; Rapacki, Kristoffer; Damm Sørensen, John; Chmura, Piotr; Westergaard, David; Dworzynski, Piotr; Sørensen, Thorkild I A; Lund, Ole; Hansen, Torben; Xu, Xun; Li, Ning; Bolund, Lars; Pedersen, Oluf; Eiberg, Hans; Krogh, Anders; Børglum, Anders D; Brunak, Søren; Kristiansen, Karsten; Schierup, Mikkel H; Wang, Jun; Gupta, Ramneek; Villesen, Palle; Rasmussen, Simon.

    In: Nature Communications, Vol. 6, 5969, 2015.

    Research output: Contribution to journal/Conference contribution in journal/Contribution to newspaperJournal articleResearchpeer-review

  13. Published

    PATBox: A Toolbox for Classification and Analysis of P-Type ATPases. / Søndergaard, Dan; Pedersen, Christian Nørgaard Storm.

    In: PLOS ONE, Vol. 10, No. 9, e0139571, 2015.

    Research output: Contribution to journal/Conference contribution in journal/Contribution to newspaperJournal articleResearchpeer-review

  14. 2014
  15. Published

    Combinatorics of Non-Ribosomal Peptide Synthetases. / Knudsen, Michael; Søndergaard, Dan; Pedersen, Christian Nørgaard Storm.

    2014.

    Research output: Contribution to conferencePosterResearchpeer-review

  16. Published
  17. Published

    Fungal NRPS-dependent siderophores: From function to prediction. / Sørensen, Jens Laurids; Knudsen, Michael; Hansen, Frederik Teilfeldt; Olesen, Claus; Romans Fuertes, Patricia; Lee, T. Verne; Søndergaard, Teis Esben; Pedersen, Christian Nørgaard Storm; Brodersen, Ditlev E.; Giese, Henriette.

    Biosynthesis and Molecular Genetics of Fungal Secondary Metabolites. ed. / Juan-Francisco Martin; Carlos Garcia-Estrada; Susanne Zeilinger. Springer, 2014. p. 317-339.

    Research output: Contribution to book/anthology/report/proceedingBook chapterResearchpeer-review

  18. Published

    Large Scale Identification and Categorization of Protein Sequences Using Structured Logistic Regression. / Pedersen, Bjørn Panella; Ifrim, Georgiana; Liboriussen, Poul; Axelsen, Kristian B.; Palmgren, Michael G.; Nissen, Poul; Wiuf, Carsten Henrik; Pedersen, Christian Nørgaard Storm.

    In: P L o S One, Vol. 9, No. 1, e85139, 20.01.2014.

    Research output: Contribution to journal/Conference contribution in journal/Contribution to newspaperJournal articleResearchpeer-review

  19. Published

    tqDist: A Library for Computing the Quartet and Triplet Distances Between Binary and General Trees. / Sand, Andreas; Holt, Morten Kragelund; Johansen, Jens; Brodal, Gerth Stølting; Mailund, Thomas; Pedersen, Christian Nørgaard Storm.

    In: Bioinformatics, Vol. 30, No. 4, 2014, p. 2079-2080.

    Research output: Contribution to journal/Conference contribution in journal/Contribution to newspaperJournal articleResearchpeer-review

  20. 2013
  21. Published

    zipHMMlib: a highly optimised HMM library exploiting repetitions in the input to speed up the forward algorithm. / Sand, Andreas; Kristiansen, Martin; Pedersen, Christian Nørgaard Storm; Mailund, Thomas.

    In: BMC Bioinformatics , Vol. 14, No. 339, 12.2013, p. 339-348.

    Research output: Contribution to journal/Conference contribution in journal/Contribution to newspaperJournal articleResearchpeer-review

  22. Published

    Algorithms for Hidden Markov Models Restricted to Occurrences of Regular Expressions. / Tataru, Paula; Sand, Andreas; Hobolth, Asger; Mailund, Thomas; Pedersen, Christian Nørgaard Storm.

    In: Biology, Vol. 2, No. 4, 08.11.2013, p. 1282-1295.

    Research output: Contribution to journal/Conference contribution in journal/Contribution to newspaperJournal articleResearchpeer-review

  23. Published

    Characterising RNA secondary structure space using information entropy. / Sükösd, Zsuzsanna; Knudsen, Bjarne; Anderson, James WJ; Novák, Adám; Kjems, Jørgen; Pedersen, Christian Nørgaard Storm.

    In: B M C Bioinformatics, Vol. 14 , No. Suppl 2, S22, 21.01.2013, p. 1-9.

    Research output: Contribution to journal/Conference contribution in journal/Contribution to newspaperJournal articleResearchpeer-review

  24. Published

    A practical O(n log2 n) time algorithm for computing the triplet distance on binary trees. / Sand, Andreas; Pedersen, Christian Nørgaard Storm; Mailund, Thomas; Brodal, Gerth Stølting; Fagerberg, Rolf.

    In: B M C Bioinformatics, Vol. 14, No. Suppl 2, 2013, p. S18.

    Research output: Contribution to journal/Conference contribution in journal/Contribution to newspaperConference articleResearchpeer-review

  25. Published

    Algorithms for Computing the Triplet and Quartet Distances for Binary and General Trees. / Sand, Andreas; Holt, Morten Kragelund; Johansen, Jens; Fagerberg, Rolf; Pedersen, Christian Nørgaard Storm; Brodal, Gerth Stølting; Mailund, Thomas.

    In: Biology, Vol. 2, No. 4, 2013, p. 1189-1209.

    Research output: Contribution to journal/Conference contribution in journal/Contribution to newspaperJournal articleResearchpeer-review

  26. Published

    Efficient Algorithms for Computing the Triplet and Quartet Distance Between Trees of Arbitrary Degree. / Brodal, Gerth Stølting; Fagerberg, Rolf; Mailund, Thomas; Pedersen, Christian Nørgaard Storm; Sand, Andreas.

    In: The Annual A C M - S I A M Symposium on Discrete Algorithms. Proceedings, Vol. 24, 2013, p. 1814-1832.

    Research output: Contribution to journal/Conference contribution in journal/Contribution to newspaperConference articleResearchpeer-review

  27. Published

    GPU-Accelerated High-Accuracy Molecular Docking using Guided Differential Evolution. / Simonsen, Martin; Christensen, Mikael Hvidtfelt; Thomsen, Rene; Pedersen, Christian Nørgaard Storm.

    Massively Parallel Evolutionary Computation on GPGPUs. ed. / Shigeyoshi tsutsui; Pierre Collet. Springer Publishing Company, 2013.

    Research output: Contribution to book/anthology/report/proceedingBook chapterResearchpeer-review

  28. Published

    Methods for Similarity-Based Virtual Screening. / Kristensen, Thomas Greve; Nielsen, Jesper; Pedersen, Christian Nørgaard Storm.

    In: Computational and Structural Biotechnology Journal, Vol. 5, No. 6, 2013.

    Research output: Contribution to journal/Conference contribution in journal/Contribution to newspaperJournal articleResearchpeer-review

  29. 2012
  30. Published

    PPfold 3.0: fast RNA secondary structure prediction using phylogeny and auxiliary data. / Sükösd, Zsuzsanna; Knudsen, Bjarne; Kjems, Jørgen; Pedersen, Christian Nørgaard Storm.

    In: Bioinformatics, Vol. 28, No. 20, 09.11.2012, p. 2691-2692.

    Research output: Contribution to journal/Conference contribution in journal/Contribution to newspaperJournal articleResearchpeer-review

  31. Published

    shortran : A pipeline for small RNA-seq data analysis. / Gupta, Vikas; Markmann, Katharina; Pedersen, Christian Nørgaard Storm; Stougaard, Jens; Andersen, Stig Uggerhøj.

    In: Bioinformatics, Vol. 28, No. 20, 2012, p. 2698-2700.

    Research output: Contribution to journal/Conference contribution in journal/Contribution to newspaperJournal articleResearchpeer-review

  32. Published

    Evolution of plant P-type ATPases. / Pedersen, Christian Nørgaard Storm; Axelsen, Kristian B.; Harper, Jeffrey F.; Palmgren, Michael G.

    In: Frontiers in Plant Science, Vol. 21, 2012.

    Research output: Contribution to journal/Conference contribution in journal/Contribution to newspaperJournal articleResearchpeer-review

  33. Published

    UniMoG - A unifying framework for genomic distance calculation and sorting based DCJ. / Hilker, Rolf; Sickinger, Corinna; Pedersen, Christian Nørgaard Storm; Stoye, Jens .

    In: Bioinformatics, Vol. 28, No. 19, 2012, p. 2509-2511.

    Research output: Contribution to journal/Conference contribution in journal/Contribution to newspaperJournal articleResearchpeer-review

  34. 2011
  35. Published

    A sub-cubic time algorithm for computing the quartet distance between two general trees. / Nielsen, Jesper; Kristensen, Anders Kabell; Mailund, Thomas; Pedersen, Christian Nørgaard Storm.

    In: Algorithms for Molecular Biology, Vol. 6, No. 15, 03.06.2011.

    Research output: Contribution to journal/Conference contribution in journal/Contribution to newspaperJournal articleResearchpeer-review

  36. Published

    Using Inverted Indices for Accelerating LINGO Calculations. / Kristensen, Thomas Greve; Nielsen, Jesper; Pedersen, Christian Nørgaard Storm.

    In: Journal of Chemical Information and Modeling, Vol. 51, No. 3, 18.02.2011, p. 597-600.

    Research output: Contribution to journal/Conference contribution in journal/Contribution to newspaperJournal articleResearchpeer-review

  37. Published

    GPU-Accelerated High-Accuracy Molecular Docking using Guided Differential Evolution. / Simonsen, Martin; Thomsen, R.; Christensen, M. H.; Pedersen, Christian Nørgaard Storm.

    GECCO'11 Proceedings of the 13th annual conference on Genetic and evolutionary computation. Association for Computing Machinery, 2011. p. 1803-1810.

    Research output: Contribution to book/anthology/report/proceedingArticle in proceedingsResearchpeer-review

  38. Published

    Inference of Large Phylogenies Using Neighbour-Joining. / Simonsen, Martin; Mailund, Thomas; Pedersen, Christian Nørgaard Storm.

    In: Biomedical Engineering Systems and Technologies, Vol. 127, No. 5, 2011, p. 334-344.

    Research output: Contribution to journal/Conference contribution in journal/Contribution to newspaperJournal articleResearchpeer-review

  39. Published

    Molecular Docking with Ligand Attached Water Molecules. / Lie, Mette Alstrup; Thomsen, Rene; Pedersen, Christian Nørgaard Storm; Schiøtt, Birgit; Christensen, Mikael Hvidtfeldt.

    In: Journal of Chemical Information and Modeling, Vol. 51, No. 4, 2011, p. 909-917.

    Research output: Contribution to journal/Conference contribution in journal/Contribution to newspaperJournal articleResearchpeer-review

  40. Published

    Rapid Computation of Distance Estimators from Nucleotide and Amino Acid Alignments. / Simonsen, Martin; Pedersen, Christian Nørgaard Storm.

    Proceedings of the 26th Annual ACM Symposium on Applied Computing. Association for Computing Machinery, 2011.

    Research output: Contribution to book/anthology/report/proceedingArticle in proceedingsResearchpeer-review

  41. 2010
  42. Published

    Using the Power of Modern Processors in Bioformatics. / Simonsen, Martin; Sand, Andreas; Mailund, Thomas; Pedersen, Christian Nørgaard Storm.

    2010. Poster session presented at Conference on IT research at AU, Århus, Denmark.

    Research output: Contribution to conferencePosterResearch

  43. Published

    A tree-based method for the rapid screening of chemical fingerprints. / Kristensen, Thomas G; Nielsen, Jesper; Pedersen, Christian N S.

    In: Algorithms for Molecular Biology, Vol. 5, No. 9, 2010.

    Research output: Contribution to journal/Conference contribution in journal/Contribution to newspaperJournal articleResearchpeer-review

  44. Published

    Building Very Large Neighbour-Joining Trees. / Simonsen, Martin; Mailund, Thomas; Pedersen, Christian Nørgaard Storm.

    BIOINFORMATICS 2010: Proceedings of the First International Conference on Bioinformatics (part of the 3rd International Joint Conference on Biomedical Engineering Systems and Technologies, BIOSTEC 2010). ed. / Ana Fred; Joaquim Filipe; Hugo Gamboa. Institute for Systems and Technologies of Information, Control and Communication, 2010. p. 26.

    Research output: Contribution to book/anthology/report/proceedingArticle in proceedingsResearchpeer-review

  45. Published

    Data Structures for Accelerating Tanimoto Queries on Real Valued Vectors. / Kristensen, Thomas Greve; Pedersen, Christian Nørgaard Storm.

    Algorithms in Bioinformatics: 10th International Workshop (WABI 2010). ed. / Vincent Moulton; Mona Singh. Vol. 6293 Springer, 2010. p. 28-39.

    Research output: Contribution to book/anthology/report/proceedingArticle in proceedingsResearchpeer-review

  46. Published

    HMMlib: A C++ Library for General Hidden Markov Models Exploiting Modern CPUs. / Sand, Andreas; Brask, Asbjørn Tølbøl; Pedersen, Christian Nørgaard Storm; Mailund, Thomas; Brask, Asbjørn Tølbøl.

    2010 Ninth International Workshop on Parallel and Distributed Methods in Verification and Second International Workshop on High Performance Computational Systems Biology. IEEE, 2010. p. 126 - 134 .

    Research output: Contribution to book/anthology/report/proceedingArticle in proceedingsResearchpeer-review

  47. 2009
  48. Published

    A Quadratic Time Algorithm for Computing the Quartet Distance between Two General Trees. / Mailund, Thomas; Nielsen, Jesper; Pedersen, Christian Storm.

    Proceedings of IJCBS 2009. IEEE Computer Society Press, 2009. p. 565-568.

    Research output: Contribution to book/anthology/report/proceedingArticle in proceedingsResearchpeer-review

  49. Published

    A fast algorithm for genome wide haplotype pattern mining. / Besenbacher, Søren; Pedersen, Christian Storm; Mailund, Thomas.

    In: B M C Bioinformatics, No. suppl. 1, 2009, p. 772.

    Research output: Contribution to journal/Conference contribution in journal/Contribution to newspaperConference articleResearchpeer-review

  50. Published

    A tree based method for the rapid screening of chemical fingerprints. / Kristensen, Thomas Greve; Nielsen, Jesper; Pedersen, Christian Nørgaard Storm.

    In: Lecture Notes in Computer Science, Vol. 5724, 2009, p. 194-205.

    Research output: Contribution to journal/Conference contribution in journal/Contribution to newspaperConference articleResearchpeer-review

  51. Published

    Automatic classification of P-Type ATPases using SLR. / Liboriussen, Poul; Pedersen, Bjørn Panyella; Ifrim, Georgiana; Nissen, Poul; Pedersen, Christian Storm.

    2009. Poster session presented at 17th Annual International Conference on Intelligent Systems for Molecular Biology (ISMB) & 8th European Conference on Computational Biology (ECCB), Stockholm, Sweden.

    Research output: Contribution to conferencePosterResearch

  52. Published

    Building very large neighbour-joining trees. / Simonsen, Martin; Mailund, Thomas; Pedersen, Christian Storm.

    2009. Poster session presented at 17th Annual International Conference on Intelligent Systems for Molecular Biology (ISMB) & 8th European Conference on Computational Biology (ECCB), Stockholm, Sweden.

    Research output: Contribution to conferencePosterResearch

  53. Published

    Investigation of a simple heuristic improving the speed of statistical alignments. / Nielsen, Jesper; Pedersen, Christian Storm; Hein, Jotun.

    2009. Poster session presented at 17th Annual International Conference on Intelligent Systems for Molecular Biology (ISMB) & 8th European Conference on Computational Biology (ECCB), Stockholm, Sweden.

    Research output: Contribution to conferencePosterResearch

  54. Published

    Largest Common Chemical Feature Subtree as a Virtual Screening Method. / Kristensen, Thomas Greve; Pedersen, Christian Storm; Thomsen, Rene; Christensen, Mikael Hvidtfeldt.

    2009. Poster session presented at 17th Annual International Conference on Intelligent Systems for Molecular Bioligy (ISMB) & 8th European Conference on Computational Biology (ECCB), Stockholm, Sweden.

    Research output: Contribution to conferencePosterResearch

  55. Published

    Optimal Overlay of Ligands with Flexible Bonds Using Differential Evolution. / Pedersen, Christian Storm; Kristensen, Thomas Greve.

    2009. Poster session presented at 17th Annual International Conference on Intelligent Systems for Molecular Bioligy (ISMB) & 8th European Conference on Computational Biology (ECCB), Stockholm, Sweden.

    Research output: Contribution to conferencePosterResearch

  56. Published

    Optimal Overlay of Ligands with Flexible Bonds Using Differential Evolution. / Kristensen, Thomas Greve; Pedersen, Christian Storm.

     Proceedings of the 2009 International Joint conferences on Bioinformatics, System biology and Intelligent Computing (IJCBS2009). ed. / Joe Zhang; G.-Z. Li; J.Y. Yang. IEEE Computer Society Press, 2009. p. 331-334.

    Research output: Contribution to book/anthology/report/proceedingArticle in proceedingsResearchpeer-review

  57. 2008
  58. Published

    Rapid neighbour-joining. / Simonsen, Martin; Mailund, Thomas; Pedersen, Christian N.S.

    Algorithms in Bioinformatics - 8th International Workshop, WABI 2008, Proceedings. 2008. p. 113-122.

    Research output: Contribution to book/anthology/report/proceedingArticle in proceedingsResearchpeer-review

  59. Published

    All-to-all RF Distance Methods. / Kristensen, Thomas Greve; Pedersen, Christian Storm.

    2008. Poster session presented at Bioinformatics 2008, Warszawa, Poland.

    Research output: Contribution to conferencePosterResearch

  60. Published

    Computing the all-pairs quartet distance on a set of evolutionary trees. / Stissing, Martin; Mailund, Thomas; Pedersen, Christian Storm; Brodal, Gerth Stølting; Fagerberg, Rolf.

    In: Journal of Bioinformatics and Computational Biology, Vol. 6, No. 1, 2008, p. 37-50.

    Research output: Contribution to journal/Conference contribution in journal/Contribution to newspaperJournal articleResearchpeer-review

  61. Published

    Rapid Neighbour-Joining. / Simonsen, Martin; Mailund, Thomas; Pedersen, Christian Storm.

    Proceedings of the 8th International Workshop on Algorithms in Bioinformatics (WABI). 2008. p. 113-122.

    Research output: Contribution to book/anthology/report/proceedingArticle in proceedingsResearchpeer-review

  62. 2007
  63. Published

    Computing the All-Pairs Quartet Distance on a Set of Evolutionary Trees. / Stissing, Martin; Mailund, Thomas; Pedersen, Christian Nørgaard Storm; Brodal, Gerth Stølting; Fagerberg, Rolf.

    Proceedings of the 5th Asia-Pacific Bioinformatics Conference (APBC). 2007. p. 91-100.

    Research output: Contribution to book/anthology/report/proceedingArticle in proceedingsResearchpeer-review

  64. Published

    Computing the Quartet Distance between Evolutionary Trees of Bounded Degree. / Stissing, Martin; Pedersen, Christian Nørgaard Storm; Mailund, Thomas; Brodal, Gerth Stølting.

    Proceedings of the 5th Asia-Pacific Bioinformatics Conference (APBC). 2007. p. 101-110.

    Research output: Contribution to book/anthology/report/proceedingArticle in proceedingsResearchpeer-review

  65. Published

    Experiences with GeneRecon on MiG. / Mailund, Thomas; Pedersen, Christian Nørgaard Storm; Bardino, Jonas; Vinter, Brian; Karlsen, Henrik.

    In: Future Generation Computer Systems - The International Journal of eScience, Vol. 23, 2007, p. 580-586.

    Research output: Contribution to journal/Conference contribution in journal/Contribution to newspaperJournal articleResearchpeer-review

  66. 2006
  67. Published

    Fast Calculation of the Quartet Distance Between Trees of Arbitrary Degrees. / Christiansen, Chris; Mailund, Thomas; Pedersen, Christian Nørgaard Storm; Randers, Martin; Stissing, Martin.

    In: Algorithms for Molecular Biology, Vol. 1, No. 16, 2006.

    Research output: Contribution to journal/Conference contribution in journal/Contribution to newspaperJournal articleResearchpeer-review

  68. Published

    GeneRecon—A coalescent based tool for fine-scale association mapping. / Mailund, Thomas; Schierup, Mikkel Heide; Pedersen, Christian Nørgaard Storm; Madsen, Jesper Nymann; Hein, Jotun; Schauser, Leif.

    In: Bioinformatics, Vol. 22, No. 18, 2006, p. 2317–2318.

    Research output: Contribution to journal/Conference contribution in journal/Contribution to newspaperJournal articleResearchpeer-review

  69. Published

    Recrafting the Neighbor-Joining Method. / Mailund, ; Brodal, Gerth Stølting; Fagerberg, Rolf; Pedersen, Christian Nørgaard Storm; Phillips, Derek.

    In: B M C Bioinformatics, Vol. 7, No. 29, 2006.

    Research output: Contribution to journal/Conference contribution in journal/Contribution to newspaperJournal articleResearchpeer-review

  70. 2005
  71. Published

    CoaSim: A Flexible Environment for Simulating Genetic Data under Coalescent Models. / Mailund, ; Schierup, Mikkel Heide; Pedersen, Christian Nørgaard Storm; Mechlenborg, Peter; Madsen, Jesper N; Schauser, Leif.

    In: B M C Bioinformatics, Vol. 6, No. 252, 2005.

    Research output: Contribution to journal/Conference contribution in journal/Contribution to newspaperJournal articleResearchpeer-review

  72. Published

    Computing the Quartet Distance between Trees of Arbitrary Degree. / Christiansen, Chris; Mailund, ; Pedersen, Christian Nørgaard Storm; Randers, Martin.

    Proceedings of the 5th International Workshop on Algorithms in Bioinformatics (WABI). 2005. p. 77-88.

    Research output: Contribution to book/anthology/report/proceedingArticle in proceedingsResearchpeer-review

  73. Published

    Initial experiences with GeneRecon on MiG. / Mailund, ; Pedersen, Christian Nørgaard Storm; Bardino, Jonas; Vinter, Brian; Karlsen, Henrik H.

    Proceedings of The 2005 International Conference on Grid Computing and Applications (GCA). 2005.

    Research output: Contribution to book/anthology/report/proceedingArticle in proceedingsResearchpeer-review

  74. Published

    Quartet Distance between General Trees. / Christiansen, Chris; Mailund, ; Pedersen, Christian Nørgaard Storm; Randers, Martin.

    Proceedings of International Conference on Numerical Analysis and Applied Mathematics (ICNAAM). 2005. p. 796-799.

    Research output: Contribution to book/anthology/report/proceedingArticle in proceedingsResearchpeer-review

  75. Published

    RBT—A Tool for Building Refined Buneman Trees. / Besenbacher, Søren; Mailund; Westh-Nielsen, Lasse; Pedersen, Christian N. Storm.

    In: Bioinformatics, Vol. 21, No. 8, 2005, p. 1711-1712.

    Research output: Contribution to journal/Conference contribution in journal/Contribution to newspaperJournal articleResearchpeer-review

  76. 2004
  77. Published

    QDist - Quartet Distance between Evolutionary Trees. / Mailund, T.; Pedersen, C.N.S.

    In: Bioinformatics, Vol. 20, No. 10, 2004, p. 1636-1637.

    Research output: Contribution to journal/Conference contribution in journal/Contribution to newspaperJournal articleResearchpeer-review

  78. Published

    QDist—Quartet Distance Between Evolutionary Trees. / Mailund, ; Pedersen, Christian N. Storm.

    In: Bioinformatics, Vol. 20, No. 10, 2004, p. 1636-1637.

    Research output: Contribution to journal/Conference contribution in journal/Contribution to newspaperJournal articleResearchpeer-review

  79. Published

    QuickJoin - Fast Neighbour-Joining Tree Reconstruction. / Mailund, T.; Pedersen, C.N.S.

    In: Bioinformatics, Vol. 20, No. 17, 2004, p. 3261-3262.

    Research output: Contribution to journal/Conference contribution in journal/Contribution to newspaperJournal articleResearchpeer-review

  80. Published

    QuickJoin—Fast Neighbour-Joining Tree Reconstruction. / Mailund, ; Pedersen, Christian N. Storm.

    In: Bioinformatics, Vol. 20, No. 17, 2004, p. 3261-3262.

    Research output: Contribution to journal/Conference contribution in journal/Contribution to newspaperJournal articleResearchpeer-review

  81. Published

    RBT - A Tool for Building Refined Buneman Trees. / Besenbacher, S.; Mailund, T.; Westh-Nielsen, L.; Pedersen, C.N.S.

    In: Bioinformatics, Vol. 21, No. 8, 2004, p. 1711-1712.

    Research output: Contribution to journal/Conference contribution in journal/Contribution to newspaperJournal articleResearchpeer-review

  82. Published

    RBT -- A tool for building refined Buneman trees. / Besenbacher, Søren; Mailund, Thomas; Westh-Nielsen, L.; Pedersen, Christian Storm.

    In: Bioinformatics, Vol. doi:10.1093/bti195, 2004, p. in press.

    Research output: Contribution to journal/Conference contribution in journal/Contribution to newspaperJournal articleResearch

  83. 2003
  84. Published

    Computing Refined Buneman Trees in Cubic Time. / Brodal, G.S.; Fagerberg, R.; Östlin, A.; Pedersen, C.N.S.; Rao, S.S.

    Algorithms in Bioinformatics: Third International Workshop, WABI 2003, Budapest, Hungary, September 15-20, 2003. Proceedings. ed. / Gary Benson; Roderic Page. Springer, 2003. p. 259-270.

    Research output: Contribution to book/anthology/report/proceedingArticle in proceedingsResearchpeer-review

  85. Published

    Computing the Quartet Distance Between Evolutionary Trees in Time O(n log n). / Brodal, Gerth Sølfting; Fagerberg, Rolf; Pedersen, Christian Nørgaard Storm.

    In: Algorithmica, Vol. 38, No. 2, 2003, p. 377-395.

    Research output: Contribution to journal/Conference contribution in journal/Contribution to newspaperJournal articleResearchpeer-review

  86. Published

    Recursions for statistical multiple alignment. / Hein, Jotun; Jensen, J.L.; Pedersen, Christian Nørgaard Storm.

    In: Proceedings of the National Academy of Sciences of the United States of America, Vol. 100, No. 25, 2003, p. 14960-14965.

    Research output: Contribution to journal/Conference contribution in journal/Contribution to newspaperJournal articleResearchpeer-review

  87. Published

    Speeding Up Neighbour-Joining Tree Construction. / Brodal, Gerth Stølting; Fagerberg, Rolf; Mailund, Thomas; Pedersen, Christian Nørgaard Storm; Phillips, Derek.

    Work package 5 ed. www.brics.dk : ALCOM-FT, 2003. 9 p.

    Research output: Book/anthology/dissertation/reportReportResearch

  88. Published

    Speeding Up Neighbour-Joining Tree Construction. / Brodal, Gerth Stølting; Fagerberg, Rolf; Mailund, T; Pedersen, Christian N. Storm; Phillips, Derek.

    2003.

    Research output: Working paperResearch

  89. 2002
  90. Published

    Bioinformatik ved Aarhus Universitet. / Pedersen, C.N.S.

    In: Biozoom, No. 3, 2002, p. 12-18.

    Research output: Contribution to journal/Conference contribution in journal/Contribution to newspaperLetterResearch

  91. Published

    Comparative Methods for Gene Structure Prediction in Homologous Sequences. / Pedersen, C.N.S.; Scharling, T.; Guigó, R. (Editor); Gusfield, D. (Editor).

    Ikke angivet. Vol. 2452/2002 2452 of Lecture Notes in Computer Science. ed. Springer, 2002. p. 220-234.

    Research output: Contribution to book/anthology/report/proceedingArticle in proceedingsResearchpeer-review

  92. Published

    Recursions for Statistical Multiple Alignment. / Hein, Jotun; Pedersen, Christian Nørgaard Storm; Jensen, Jens Ledet.

    In: Proceedings of the National Academy of Sciences of the United States of America, Vol. 100, No. 25, 2002, p. 14960-14965.

    Research output: Contribution to journal/Conference contribution in journal/Contribution to newspaperJournal articleResearchpeer-review

  93. Published

    Recursions for Statistical Multiple Alignment. / Hein, J.; Jensen, Jens Ledet; Pedersen, Christian Nørgaard Storm.

    Århus : Department of Mathematical Sciences , University of Aarhus, 2002.

    Research output: Working paperResearch

  94. Published

    Solving the String Statistics Problem in Time O(n log n). / Brodal, Gerth Stølting; Lyngsø, Rune B.; Östlin, Anna; Pedersen, Christian Nørgaard Storm.

    Automata, Languages and Programming: 29th International Colloquium, ICALP 2002 Málaga, Spain, July 8–13, 2002 Proceedings. ed. / Peter Widmayer; Stephan Eidenbenz; Francisco Triguero; Rafael Morales; Ricardo Conejo; Matthew Hennessy. Springer, 2002. p. 728-739.

    Research output: Contribution to book/anthology/report/proceedingArticle in proceedingsResearchpeer-review

  95. Published

    The Consensus String Problem and the Complexity of Comparing Hidden Markov Models. / Lyngsø, Rune Bang; Pedersen, Christian Nørgaard Storm.

    In: Journal of Computer and System Sciences, Vol. 65, No. 3, 2002, p. 545-569.

    Research output: Contribution to journal/Conference contribution in journal/Contribution to newspaperJournal articleResearchpeer-review

  96. 2001
  97. Published

    Comparing Hidden Markov Model and a Stochastic Context-Free Grammer. / Jagota, A.; Lyngsø, R.B.; Pedersen, C.N.S.; Gascuel, O. (Editor); Moret, B.M.E. (Editor).

    Proceedings of the First International Workshop on Algorithms in Bioinformatics. Vol. Volume 2149/2001 2149 of Lecture Notes in Computer Science. ed. Springer, 2001. p. 69-94.

    Research output: Contribution to book/anthology/report/proceedingArticle in proceedingsResearchpeer-review

  98. Published

    Complexity of Comparing Hidden Markov Models. / Lyngsø, R.B.; Pedersen, C.N.S.; Eades, P. (Editor); Takaoka, T. (Editor).

    Ikke angivet. 2223 of Lecture Notes in Computer Science. ed. Springer, 2001. p. 416-428.

    Research output: Contribution to book/anthology/report/proceedingArticle in proceedingsResearchpeer-review

  99. Published

    Computing the Quartet Distance Between Evolutionary Trees in Time O(n log² n). / Brodal, Gerth S.; Fagerberg, Rolf; Pedersen, Christian N.S.; Eades, P. (Editor); Takaoka, T. (Editor).

    Proceedings of Algorithms and Computation : 12th International Symposium, ISAAC 2001. Vol. 2223/2001 2223 of Lecture Notes in Computer Science. ed. Springer, 2001. p. 731-742.

    Research output: Contribution to book/anthology/report/proceedingArticle in proceedingsResearchpeer-review

  100. Published

    The Complexity of Constructing Evolutionary Trees Using Experiments. / Brodal, Gerth Stølting; Fagerberg, Rolf; Pedersen, Christian N.S.; Östlin, Anna.

    Automata, Languages and Programming: 28th International Colloquium, ICALP 2001 Crete, Greece, July 8–12, 2001 Proceedings. ed. / Fernando Orejas; Paul G. Spirakis; Jan van Leeuwen. Springer, 2001. p. 140-151.

    Research output: Contribution to book/anthology/report/proceedingBook chapterResearch

  101. Published

    The Complexity of Constructing Evolutionary Trees Using Experiments. / Brodal, Gerth Stølting; Fagerberg, Rolf; Pedersen, Christian Nørgaard Storm; Östlin, Anna; Orejas, Farnando (Editor); Spirakis, Poul G. (Editor); Leeuwen, Jan van (Editor).

    Lecture Notes In Computer Science; Vol. 2076: Proceedings of the 28th International Colloquium on Automata, Languages and Programming. Vol. 2076/2001 2076 of Lecture Notes in Computer Science. ed. Springer, 2001. p. 140-151.

    Research output: Contribution to book/anthology/report/proceedingArticle in proceedingsResearchpeer-review