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Single-cell amplified genomes of two uncultivated members of the deltaproteobacterial SEEP-SRB1 clade, isolated from marine sediment
Publikation: Bidrag til tidsskrift/Konferencebidrag i tidsskrift /Bidrag til avis › Tidsskriftartikel › Forskning › peer review
DOI
- https://doi.org/10.1016/j.margen.2019.01.004
Forlagets udgivne version
- Caitlin Petro, Georgia Institute of Technology ,
- Lara M. Jochum, Ludwig Maximilian University of Munich ,
- Lars Schreiber, National Research Council Canada ,
- Ian P.G. Marshall
- Andreas Schramm
- Kasper U. Kjeldsen
The SEEP-SRB1 is a diverse clade of sulfate reducing bacteria affiliated with the deltaproteobacterial family Desulfobacteraceae. Here we report the draft genome sequences of two single cells belonging to the SEEP-SRB1 clade, isolated from marine sediment in Aarhus Bay, Denmark, by fluorescence activated cell sorting (FACS). The draft genomes measure 2.12 Mb and 0.46 Mb, with GC contents of 45% and 42%. Phylogenetic placement of the 16S rRNA genes places the SAGs within the subgroups SEEP-SRB1e and SEEP-SRB1d. While these subgroups are thought to play a role in non-methane hydrocarbon degradation, there is little genomic information available to confirm their metabolic function. As such, these novel single-cell amplified genomes provide valuable insight into the metabolic potential of this prevalent subseafloor clade.
| Originalsprog | Engelsk |
|---|---|
| Tidsskrift | Marine Genomics |
| Vol/bind | 46 |
| Sider (fra-til) | 66-69 |
| Antal sider | 4 |
| ISSN | 1874-7787 |
| DOI | |
| Status | Udgivet - aug. 2019 |
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