Refining QTL with high-density SNP genotyping and whole genome sequence in three cattle breeds

Publikation: Bidrag til bog/antologi/rapport/proceedingKonferenceabstrakt i proceedingsForskningpeer review

Standard

Refining QTL with high-density SNP genotyping and whole genome sequence in three cattle breeds. / Sahana, Goutam; Guldbrandtsen, Bernt; Lund, Mogens Sandø.

Book of Abstracts. Bind 18 2012. udg. The Netherlands : Wageningen Academic Publishers, 2012. s. 354.

Publikation: Bidrag til bog/antologi/rapport/proceedingKonferenceabstrakt i proceedingsForskningpeer review

Harvard

Sahana, G, Guldbrandtsen, B & Lund, MS 2012, Refining QTL with high-density SNP genotyping and whole genome sequence in three cattle breeds. i Book of Abstracts. 2012 udg, bind 18, Wageningen Academic Publishers, The Netherlands, s. 354, 63rd Annual Meeting EAAP 2012, Bratislava, Slovakiet, 27/08/2012.

APA

Sahana, G., Guldbrandtsen, B., & Lund, M. S. (2012). Refining QTL with high-density SNP genotyping and whole genome sequence in three cattle breeds. I Book of Abstracts (2012 udg., Bind 18, s. 354). Wageningen Academic Publishers.

CBE

Sahana G, Guldbrandtsen B, Lund MS. 2012. Refining QTL with high-density SNP genotyping and whole genome sequence in three cattle breeds. I Book of Abstracts. 2012 udg. The Netherlands: Wageningen Academic Publishers. s. 354.

MLA

Sahana, Goutam, Bernt Guldbrandtsen, og Mogens Sandø Lund "Refining QTL with high-density SNP genotyping and whole genome sequence in three cattle breeds". Book of Abstracts. 2012 udg., The Netherlands: Wageningen Academic Publishers. 2012, 354.

Vancouver

Sahana G, Guldbrandtsen B, Lund MS. Refining QTL with high-density SNP genotyping and whole genome sequence in three cattle breeds. I Book of Abstracts. 2012 udg. Bind 18. The Netherlands: Wageningen Academic Publishers. 2012. s. 354

Author

Sahana, Goutam ; Guldbrandtsen, Bernt ; Lund, Mogens Sandø. / Refining QTL with high-density SNP genotyping and whole genome sequence in three cattle breeds. Book of Abstracts. Bind 18 2012. udg. The Netherlands : Wageningen Academic Publishers, 2012. s. 354

Bibtex

@inbook{943d7f506754435490678a0e97eb1ab9,
title = "Refining QTL with high-density SNP genotyping and whole genome sequence in three cattle breeds",
abstract = "Genome-wide association study was carried out in Nordic Holsteins, Nordic Red and Jersey breeds for functional traits using BovineHD Genotyping BreadChip (Illumina, San Diego, CA). The association analyses were carried out using both linear mixed model approach and a Bayesian variable selection method. Principal components were used to account for population structure. The QTL segregating in all three breeds were selected and a few of the most significant ones were followed in further analyses. The polymorphisms in the identified QTL regions were imputed using 90 whole genome sequences available from these three breeds. Imputations were done using IMPUTE v2.2. Association analyses with imputed polymorphisms were repeated for the targeted regions. The QTL genotypes of the sires with more than 20 sons were determined by an a posteriori granddaughter design. The concordance of sires for putative quantitative trait nucleotide was determined. ",
author = "Goutam Sahana and Bernt Guldbrandtsen and Lund, {Mogens Sand{\o}}",
year = "2012",
month = aug,
day = "27",
language = "English",
isbn = "978-90-8686-206-1",
volume = "18",
pages = "354",
booktitle = "Book of Abstracts",
publisher = "Wageningen Academic Publishers",
edition = "2012",
note = "63rd Annual Meeting EAAP 2012, EAAP ; Conference date: 27-08-2012 Through 31-08-2012",

}

RIS

TY - ABST

T1 - Refining QTL with high-density SNP genotyping and whole genome sequence in three cattle breeds

AU - Sahana, Goutam

AU - Guldbrandtsen, Bernt

AU - Lund, Mogens Sandø

N1 - Conference code: 63

PY - 2012/8/27

Y1 - 2012/8/27

N2 - Genome-wide association study was carried out in Nordic Holsteins, Nordic Red and Jersey breeds for functional traits using BovineHD Genotyping BreadChip (Illumina, San Diego, CA). The association analyses were carried out using both linear mixed model approach and a Bayesian variable selection method. Principal components were used to account for population structure. The QTL segregating in all three breeds were selected and a few of the most significant ones were followed in further analyses. The polymorphisms in the identified QTL regions were imputed using 90 whole genome sequences available from these three breeds. Imputations were done using IMPUTE v2.2. Association analyses with imputed polymorphisms were repeated for the targeted regions. The QTL genotypes of the sires with more than 20 sons were determined by an a posteriori granddaughter design. The concordance of sires for putative quantitative trait nucleotide was determined.

AB - Genome-wide association study was carried out in Nordic Holsteins, Nordic Red and Jersey breeds for functional traits using BovineHD Genotyping BreadChip (Illumina, San Diego, CA). The association analyses were carried out using both linear mixed model approach and a Bayesian variable selection method. Principal components were used to account for population structure. The QTL segregating in all three breeds were selected and a few of the most significant ones were followed in further analyses. The polymorphisms in the identified QTL regions were imputed using 90 whole genome sequences available from these three breeds. Imputations were done using IMPUTE v2.2. Association analyses with imputed polymorphisms were repeated for the targeted regions. The QTL genotypes of the sires with more than 20 sons were determined by an a posteriori granddaughter design. The concordance of sires for putative quantitative trait nucleotide was determined.

M3 - Conference abstract in proceedings

SN - 978-90-8686-206-1

VL - 18

SP - 354

BT - Book of Abstracts

PB - Wageningen Academic Publishers

CY - The Netherlands

T2 - 63rd Annual Meeting EAAP 2012

Y2 - 27 August 2012 through 31 August 2012

ER -