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Methods for interpreting lists of affected genes obtained in a DNA microarray experiment

Publikation: Bidrag til tidsskrift/Konferencebidrag i tidsskrift /Bidrag til avisKonferenceartikelForskningpeer review

Dokumenter

DOI

  • Jakob Hedegaard, Danmark
  • Christina Arce, Departamento de Genética, Facultad de Veterinaria, Universidad de Córdoba, Spanien
  • Silvio Bicciato, University of Modena and Reggio Emilia, Department of Biomedical Sciences, Italien
  • Agnès Bonnet, Laboratoire de Génétique Cellulaire, INRA, Frankrig
  • Bart Buitenhuis
  • Melania Collado-Romero, Departamento de Genética, Facultad de Veterinaria, Universidad de Córdoba, Spanien
  • Lene N Conley
  • Magali SanCristobal, Laboratoire de Génétique Cellulaire, INRA, Frankrig
  • Francesco Ferrari, University of Padova, Department of Biology, Italien
  • Juan J Garrido, Departamento de Genética, Facultad de Veterinaria, Universidad de Córdoba, Spanien
  • Martien AM Groenen, Animal Breeding and Genomics Centre, Wageningen University, Holland
  • Henrik Hornshøj, Danmark
  • Ina Hulsegge, Animal Breeding and Genomics Centre, Animal Sciences Group, Holland
  • Li Jiang, Danmark
  • Ángeles Jiménez-Marín, Departamento de Genética, Facultad de Veterinaria, Universidad de Córdoba, Spanien
  • Arun Kommadath, Animal Breeding and Genomics Centre, Animal Sciences Group, Holland
  • Sandrine Lagarrigue, INRA, Agrocampus Ouest, Frankrig
  • Jack AM Leunissen, Laboratory og Bioinformatics, Wageningen University, Holland
  • Laurence Liaubet, Laboratoire de Génétique Cellulaire, INRA, Spanien
  • Pieter BT Neerincx, Laboratory of Bioinformatics, Wageningen University, Holland
  • Haisheng Nie, Animal Breeding and Genomics Centre, Wageningen University, Holland
  • Jan van der Poel, Animal Breeding and Genomics Centre, Wageningen University, Holland
  • Dennis Prickett, Institute for Animal Health, Compton, nr Newbury, Storbritannien
  • Maria Ramirez-Boo, Departamento de Genética, Facultad de Veterinaria, Universidad de Córdoba, Spanien
  • Christèle Robert-Granié, Station d'Amélioration Génétique des Animaux, INRA, Frankrig
  • Johanna MJ Rebel, Centraal Veterinair Instituut van Wageningen, Holland
  • Axel Skarman, Danmark
  • Mari A Smits, 7Animal Breeding and Genomics Centre, Animal Sciences Group, Wageningen, Holland
  • Peter Sørensen
  • Gwenola Tosser-Klopp, Laboratoire de Génétique Cellulaire, INRA, Frankrig
  • Michael Watson, Institute for Animal Health, Compton, nr Newbury, Storbritannien
  • Biostatistik
  • Molekylær Genetik og Systembiologi
  • Institut for Genetik og Bioteknologi
The aim of this paper was to describe and compare the methods used and the results obtained by the participants in a joint EADGENE (European Animal Disease Genomic Network of Excellence) and SABRE (Cutting Edge Genomics for Sustainable Animal Breeding) workshop focusing on post analysis of microarray data. The participating groups were provided with identical lists of microarray probes, including test statistics for three different contrasts, and the normalised log-ratios for each array, to be used as the starting point for interpreting the affected probes. The data originated from a microarray experiment conducted to study the host reactions in broilers occurring shortly after a secondary challenge with either a homologous or heterologous species of Eimeria
OriginalsprogEngelsk
TidsskriftBMC Proceedings
Nummer4:S5
Antal sider7
ISSN1753-6561
DOI
StatusUdgivet - 2009
BegivenhedEADGENE and SABRE Post-analyses Workshop - Lelystad, Holland
Varighed: 12 nov. 200814 nov. 2008

Konference

KonferenceEADGENE and SABRE Post-analyses Workshop
LandHolland
ByLelystad
Periode12/11/200814/11/2008

Bibliografisk note

Udgivelsesdato: 16. July
Volumne: 3

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