Grinding up Wheat: a Massive Loss of Nucleotide Diversity Since Domestication

Anabelle Haudry, Alberto Cenci, Catherine Ravel, Thomas Bataillon, Dominique Brunel, Charles Poncet, Isabelle Hochu, Sebastien Poirier, Sylvain Santoni, Sylvain Glemin, Jacques David

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    Abstract

    Several demographic and selective events occurred during the domestication of wheat from the allotetraploid wild emmer

    (Triticum turgidum ssp. dicoccoides). Cultivated wheat has since been affected by other historical events. We analyzed

    nucleotide diversity at 21 loci in a sample of 101 individuals representing 4 taxa corresponding to representative steps in

    the recent evolution of wheat (wild, domesticated, cultivated durum, and bread wheats) to unravel the evolutionary

    history of cultivated wheats and to quantify its impact on genetic diversity. Sequence relationships are consistent with

    a single domestication event and identify 2 genetically different groups of bread wheat. The wild group is not highly

    polymorphic, with only 212 polymorphic sites among the 21,720 bp sequenced, and, during domestication, diversity was

    further reduced in cultivated forms-by 69% in bread wheat and 84% in durum wheat-with considerable differences

    between loci, some retaining no polymorphism at all. Coalescent simulations were performed and compared with our

    data to estimate the intensity of the bottlenecks associated with domestication and subsequent selection. Based on our 21-

    locus analysis, the average intensity of domestication bottleneck was estimated at about 3-giving a population size for

    the domesticated form about one third that of wild dicoccoides. The most severe bottleneck, with an intensity of about 6,

    occurred in the evolution of durum wheat. We investigated whether some of the genes departed from the empirical

    distribution of most loci, suggesting that they might have been selected during domestication or breeding. We detected

    a departure from the null model of demographic bottleneck for the hypothetical gene HgA. However, the atypical pattern

    of polymorphism at this locus might reveal selection on the linked locus Gsp1A, which may affect grain softness-an

    important trait for end-use quality in wheat.

    OriginalsprogEngelsk
    TidsskriftMolecular Biology and Evolution
    Vol/bind24
    Nummer7
    Sider (fra-til)1506-1517
    Antal sider12
    ISSN0737-4038
    DOI
    StatusUdgivet - 2007

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