Genome-wide and local pattern of linkage disequilibrium and persistence of phase for 3 Danish pig breeds

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The extent of linkage disequilibrium (LD) is of critical importance for genomic selection and marker assisted selection. The primary purpose of this study is to examine patterns of LD in three Danish pig breeds (Duroc, Landrace and Yorkshire); we also examine patterns of persistence of phase between the breeds. We quantify local LD by fitting a model relating LD to physical distance between markers in sliding windows, and use this to visualize how LD varies according to physical position. We use a similar method to examine local persistence of phase.
OriginalsprogEngelsk
TidsskriftBMC Genetics
Vol/bind14
Nummer115
Antal sider11
ISSN1471-2156
DOI
StatusUdgivet - 5 dec. 2013

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