Genome-wide coancestry reveals details of ancient and recent male-driven reticulation in baboons

Erik F. Sørensen; R. Alan Harris; Liye Zhang; Muthuswamy Raveendran; Lukas F.K. Kuderna; Jerilyn A. Walker; Jessica M. Storer; Martin Kuhlwilm; Claudia Fontsere; Lakshmi Seshadri; Christina M. Bergey; Andrew S. Burrell; Juraj Bergman; Jane E. Phillips-Conroy; Fekadu Shiferaw; Kenneth L. Chiou; Idrissa S. Chuma; Julius D. Keyyu; Julia Fischer; Marie Claude Gingras; Sejal Salvi; Harshavardhan Doddapaneni; Mikkel H. Schierup; Mark A. Batzer; Clifford J. Jolly; Sascha Knauf; Dietmar Zinner; Kyle K.H. Farh; Tomas Marques-Bonet; Kasper Munch; Christian Roos; Jeffrey Rogers

doi:10.1126/science.abn8153

Genome-wide coancestry reveals details of ancient and recent male-driven reticulation in baboons

Erik F. Sørensen, R. Alan Harris, Liye Zhang, Muthuswamy Raveendran, Lukas F.K. Kuderna, Jerilyn A. Walker, Jessica M. Storer, Martin Kuhlwilm, Claudia Fontsere, Lakshmi Seshadri, Christina M. Bergey, Andrew S. Burrell, Juraj Bergman, Jane E. Phillips-Conroy, Fekadu Shiferaw, Kenneth L. Chiou, Idrissa S. Chuma, Julius D. Keyyu, Julia Fischer, Marie Claude GingrasSejal Salvi, Harshavardhan Doddapaneni, Mikkel H. Schierup, Mark A. Batzer, Clifford J. Jolly, Sascha Knauf, Dietmar Zinner, Kyle K.H. Farh, Tomas Marques-Bonet, Kasper Munch, Christian Roos, Jeffrey Rogers

Publikation: Bidrag til tidsskrift/Konferencebidrag i tidsskrift /Bidrag til avis › Tidsskriftartikel › Forskning › peer review

21 Citationer (Scopus)

Abstract

Baboons (genus Papio) are a morphologically and behaviorally diverse clade of catarrhine monkeys that have experienced hybridization between phenotypically and genetically distinct phylogenetic species. We used high-coverage whole-genome sequences from 225 wild baboons representing 19 geographic localities to investigate population genomics and interspecies gene flow. Our analyses provide an expanded picture of evolutionary reticulation among species and reveal patterns of population structure within and among species, including differential admixture among conspecific populations. We describe the first example of a baboon population with a genetic composition that is derived from three distinct lineages. The results reveal processes, both ancient and recent, that produced the observed mismatch between phylogenetic relationships based on matrilineal, patrilineal, and biparental inheritance. We also identified several candidate genes that may contribute to species-specific phenotypes.

Originalsprog	Engelsk
Artikelnummer	eabn8153
Tidsskrift	Science (New York, N.Y.)
Vol/bind	380
Nummer	6648
ISSN	0036-8075
DOI	https://doi.org/10.1126/science.abn8153
Status	Udgivet - jun. 2023

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10.1126/science.abn8153

https://www.biorxiv.org/content/10.1101/2023.05.02.539112v1.full.pdf

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Sørensen, E. F., Harris, R. A., Zhang, L., Raveendran, M., Kuderna, L. F. K., Walker, J. A., Storer, J. M., Kuhlwilm, M., Fontsere, C., Seshadri, L., Bergey, C. M., Burrell, A. S., Bergman, J., Phillips-Conroy, J. E., Shiferaw, F., Chiou, K. L., Chuma, I. S., Keyyu, J. D., Fischer, J., ... Rogers, J. (2023). Genome-wide coancestry reveals details of ancient and recent male-driven reticulation in baboons. Science (New York, N.Y.), 380(6648), Artikel eabn8153. https://doi.org/10.1126/science.abn8153

@article{8fa1c790df784a49bc0767afb1c46143,

title = "Genome-wide coancestry reveals details of ancient and recent male-driven reticulation in baboons",

abstract = "Baboons (genus Papio) are a morphologically and behaviorally diverse clade of catarrhine monkeys that have experienced hybridization between phenotypically and genetically distinct phylogenetic species. We used high-coverage whole-genome sequences from 225 wild baboons representing 19 geographic localities to investigate population genomics and interspecies gene flow. Our analyses provide an expanded picture of evolutionary reticulation among species and reveal patterns of population structure within and among species, including differential admixture among conspecific populations. We describe the first example of a baboon population with a genetic composition that is derived from three distinct lineages. The results reveal processes, both ancient and recent, that produced the observed mismatch between phylogenetic relationships based on matrilineal, patrilineal, and biparental inheritance. We also identified several candidate genes that may contribute to species-specific phenotypes.",

author = "S{\o}rensen, {Erik F.} and Harris, {R. Alan} and Liye Zhang and Muthuswamy Raveendran and Kuderna, {Lukas F.K.} and Walker, {Jerilyn A.} and Storer, {Jessica M.} and Martin Kuhlwilm and Claudia Fontsere and Lakshmi Seshadri and Bergey, {Christina M.} and Burrell, {Andrew S.} and Juraj Bergman and Phillips-Conroy, {Jane E.} and Fekadu Shiferaw and Chiou, {Kenneth L.} and Chuma, {Idrissa S.} and Keyyu, {Julius D.} and Julia Fischer and Gingras, {Marie Claude} and Sejal Salvi and Harshavardhan Doddapaneni and Schierup, {Mikkel H.} and Batzer, {Mark A.} and Jolly, {Clifford J.} and Sascha Knauf and Dietmar Zinner and Farh, {Kyle K.H.} and Tomas Marques-Bonet and Kasper Munch and Christian Roos and Jeffrey Rogers",

year = "2023",

month = jun,

doi = "10.1126/science.abn8153",

language = "English",

volume = "380",

journal = "Science (New York, N.Y.)",

issn = "0036-8075",

publisher = "American Association for the Advancement of Science",

number = "6648",

}

Sørensen, EF, Harris, RA, Zhang, L, Raveendran, M, Kuderna, LFK, Walker, JA, Storer, JM, Kuhlwilm, M, Fontsere, C, Seshadri, L, Bergey, CM, Burrell, AS, Bergman, J, Phillips-Conroy, JE, Shiferaw, F, Chiou, KL, Chuma, IS, Keyyu, JD, Fischer, J, Gingras, MC, Salvi, S, Doddapaneni, H, Schierup, MH, Batzer, MA, Jolly, CJ, Knauf, S, Zinner, D, Farh, KKH, Marques-Bonet, T, Munch, K, Roos, C & Rogers, J 2023, 'Genome-wide coancestry reveals details of ancient and recent male-driven reticulation in baboons', Science (New York, N.Y.), bind 380, nr. 6648, eabn8153. https://doi.org/10.1126/science.abn8153

TY - JOUR

T1 - Genome-wide coancestry reveals details of ancient and recent male-driven reticulation in baboons

AU - Sørensen, Erik F.

AU - Harris, R. Alan

AU - Zhang, Liye

AU - Raveendran, Muthuswamy

AU - Kuderna, Lukas F.K.

AU - Walker, Jerilyn A.

AU - Storer, Jessica M.

AU - Kuhlwilm, Martin

AU - Fontsere, Claudia

AU - Seshadri, Lakshmi

AU - Bergey, Christina M.

AU - Burrell, Andrew S.

AU - Bergman, Juraj

AU - Phillips-Conroy, Jane E.

AU - Shiferaw, Fekadu

AU - Chiou, Kenneth L.

AU - Chuma, Idrissa S.

AU - Keyyu, Julius D.

AU - Fischer, Julia

AU - Gingras, Marie Claude

AU - Salvi, Sejal

AU - Doddapaneni, Harshavardhan

AU - Schierup, Mikkel H.

AU - Batzer, Mark A.

AU - Jolly, Clifford J.

AU - Knauf, Sascha

AU - Zinner, Dietmar

AU - Farh, Kyle K.H.

AU - Marques-Bonet, Tomas

AU - Munch, Kasper

AU - Roos, Christian

AU - Rogers, Jeffrey

PY - 2023/6

Y1 - 2023/6

N2 - Baboons (genus Papio) are a morphologically and behaviorally diverse clade of catarrhine monkeys that have experienced hybridization between phenotypically and genetically distinct phylogenetic species. We used high-coverage whole-genome sequences from 225 wild baboons representing 19 geographic localities to investigate population genomics and interspecies gene flow. Our analyses provide an expanded picture of evolutionary reticulation among species and reveal patterns of population structure within and among species, including differential admixture among conspecific populations. We describe the first example of a baboon population with a genetic composition that is derived from three distinct lineages. The results reveal processes, both ancient and recent, that produced the observed mismatch between phylogenetic relationships based on matrilineal, patrilineal, and biparental inheritance. We also identified several candidate genes that may contribute to species-specific phenotypes.

AB - Baboons (genus Papio) are a morphologically and behaviorally diverse clade of catarrhine monkeys that have experienced hybridization between phenotypically and genetically distinct phylogenetic species. We used high-coverage whole-genome sequences from 225 wild baboons representing 19 geographic localities to investigate population genomics and interspecies gene flow. Our analyses provide an expanded picture of evolutionary reticulation among species and reveal patterns of population structure within and among species, including differential admixture among conspecific populations. We describe the first example of a baboon population with a genetic composition that is derived from three distinct lineages. The results reveal processes, both ancient and recent, that produced the observed mismatch between phylogenetic relationships based on matrilineal, patrilineal, and biparental inheritance. We also identified several candidate genes that may contribute to species-specific phenotypes.

UR - http://www.scopus.com/inward/record.url?scp=85160599491&partnerID=8YFLogxK

U2 - 10.1126/science.abn8153

DO - 10.1126/science.abn8153

M3 - Journal article

C2 - 37262153

AN - SCOPUS:85160599491

SN - 0036-8075

VL - 380

JO - Science (New York, N.Y.)

JF - Science (New York, N.Y.)

IS - 6648

M1 - eabn8153

ER -

Genome-wide coancestry reveals details of ancient and recent male-driven reticulation in baboons

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