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Considerations and consequences of allowing DNA sequence data as types of fungal taxa
Publikation: Bidrag til tidsskrift/Konferencebidrag i tidsskrift /Bidrag til avis › Tidsskriftartikel › Forskning › peer review
Links
- https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6048565/pdf/ima-9-167.pdf
Forlagets udgivne version
DOI
- https://doi.org/10.5598/imafungus.2018.09.01.10
Forlagets udgivne version
- Juan Carlos Zamora, Uppsala University ,
- Mans Svensson, Uppsala University ,
- Roland Kirschner, National Central University ,
- Ibai Olariaga, Universidad Rey Juan Carlos ,
- Svengunnar Ryman, Uppsala University ,
- Luis Alberto Parra ,
- Jozsef Geml, Nat Biodivers Ctr, Biodivers Dynam ,
- Anna Rosling, Uppsala University ,
- Slavomir Adamcik ,
- Teuvo Ahti ,
- M. Catherine Aime ,
- A. Martyn Ainsworth ,
- Laszlo Albert ,
- Edgardo Alberto ,
- Alberto Altes Garcia ,
- Dmitry Ageev ,
- Reinhard Agerer ,
- Begona Aguirre-Hudson ,
- Joe Ammirati ,
- Harry Andersson ,
- Claudio Angelini ,
- Vladimir Antonin ,
- Takayuki Aoki ,
- Andre Aptroot ,
- Didier Argaud ,
- Blanca Imelda Arguello Sosa ,
- Arne Aronsen ,
- Ulf Arup ,
- Bita Asgari ,
- Boris Assyov ,
- Violeta Atienza ,
- Ditte Bandini ,
- Joao Luis Baptista-Ferreira ,
- Hans-Otto Baral ,
- Tim Baroni ,
- Robert Weingart Barreto ,
- Henry Baker ,
- Ann Bell ,
- Jean-Michel Bellanger ,
- Francesco Bellu ,
- Martin Bemmann ,
- Mika Bendiksby ,
- Egil Bendiksen ,
- Katriina Bendiksen ,
- Lajos Benedek ,
- Anna Beresova-Guttova ,
- Franz Berger ,
- Reinhard Berndt ,
- Annarosa Bernicchia ,
- Alona Yu Biketova ,
- Enrico Bizio ,
- Curtis Bjork ,
- Teun Boekhout ,
- David Boertmann
- Tanja Bohning ,
- Florent Boittin ,
- Carlos G. Boluda ,
- Menno W. Boomsluiter ,
- Jan Borovicka ,
- Tor Erik Brandrud ,
- Uwe Braun ,
- Irwin Brodo ,
- Tatiana Bulyonkova ,
- Harold H. Burdsall ,
- Bart Buyck ,
- Ana Rosa Burgaz ,
- Vicent Calatayud ,
- Philippe Callac ,
- Emanuele Campo ,
- Massimo Candusso ,
- Brigitte Capoen ,
- Joaquim Carbo ,
- Matteo Carbone ,
- Rafael F. Castaneda-Ruiz ,
- Michael A. Castellano ,
- Jie Chen ,
- Philippe Clerc ,
- Giovanni Consiglio ,
- Gilles Corriol ,
- Regis Courtecuisse ,
- Ana Crespo ,
- Cathy Cripps ,
- Pedro W. Crous ,
- Gladstone Alves da Silva ,
- Meiriele da Silva ,
- Marjo Dam ,
- Nico Dam ,
- Frank Dammrich ,
- Kanad Das ,
- Linda Davies ,
- Eske De Crop ,
- Andre De Kesel ,
- Ruben De Lange ,
- Barbara De Madrignac Bonzi ,
- Thomas Edison E. dela Cruz ,
- Lynn Delgat ,
- Vincent Demoulin ,
- Dennis E. Desjardin ,
- Paul Diederich ,
- Balint Dima ,
- Maria Martha Dios ,
- Pradeep Kumar Divakar ,
- Clovis Douanla-Meli ,
- Brian Douglas ,
- Elisandro Ricardo Drechsler-Santos ,
- Paul S. Dyer ,
- Ursula Eberhardt ,
- Damien Ertz ,
- Fernando Esteve-Raventos ,
- Javier Angel Etayo Salazar ,
- Vera Evenson ,
- Guillaume Eyssartier ,
- Edit Farkas ,
- Alain Favre ,
- Anna G. Fedosova ,
- Mario Filippa ,
- Peter Finy ,
- Adam Flakus ,
- Simon Fos ,
- Jacques Fournier ,
- Andre Fraiture ,
- Paolo Franchi ,
- Ana Esperanza Franco Molano ,
- Gernot Friebes ,
- Andreas Frisch ,
- Alan Fryday ,
- Giuliana Furci ,
- Ricardo Galan Marquez ,
- Matteo Garbelotto ,
- Joaquina Maria Garcia-Martin ,
- Monica A. Garcia Otalora ,
- Dania Garcia Sanchez ,
- Alain Gardiennet ,
- Sigisfredo Garnica ,
- Isaac Garrido Benavent ,
- Genevieve Gates ,
- Alice da Cruz Lima Gerlach ,
- Masoomeh Ghobad-Nejhad ,
- Tatiana B. Gibertoni ,
- Tine Grebenc ,
- Irmgard Greilhuber ,
- Bella Grishkan ,
- Johannes Z. Groenewald ,
- Martin Grube ,
- Gerald Gruhn ,
- Cecile Gueidan ,
- Gro Gulden ,
- Luis F. P. Gusmao ,
- Josef Hafellner ,
- Michel Hairaud ,
- Marek Halama ,
- Nils Hallenberg ,
- Roy E. Halling ,
- Karen Hansen ,
- Christoffer Bugge Harder ,
- Jacob Heilmann-Clausen ,
- Stip Helleman ,
- Alain Henriot ,
- Margarita Hernandez-Restrepo ,
- Raphael Herve ,
- Caroline Hobart ,
- Mascha Hoffmeister ,
- Klaus Hoiland ,
- Jan Holec ,
- Hakon Holien ,
- Karen Hughes ,
- Vit Hubka ,
- Seppo Huhtinen ,
- Boris Ivancevic ,
- Marian Jagers ,
- Walter Jaklitsch ,
- AnnaElise Jansen ,
- Ruvishika S. Jayawardena ,
- Thomas Stjernegaard Jeppesen ,
- Mikael Jeppson ,
- Peter Johnston ,
- Per Magnus Jorgensen ,
- Ingvar Karnefelt ,
- Liudmila B. Kalinina ,
- Gintaras Kantvilas ,
- Mitko Karadelev ,
- Taiga Kasuya ,
- Ivona Kautmanova ,
- Richard W. Kerrigan ,
- Martin Kirchmair ,
- Anna Kiyashko ,
- Daniel G. Knapp ,
- Henning Knudsen ,
- Kerry Knudsen ,
- Tommy Knutsson ,
- Miroslav Kolarik ,
- Urmas Koljalg ,
- Alica Kosuthova ,
- Attila Koszka ,
- Heikki Kotiranta ,
- Vera Kotkova ,
- Ondrej Koukol ,
- Jiri Kout ,
- Gabor M. Kovacs ,
- Martin Kriz, National Central University ,
- Asa Kruys ,
- Viktor Kudera ,
- Linas Kudzma ,
- Francisco Kuhar ,
- Martin Kukwa ,
- T. K. Arun Kumar ,
- Vladimir Kunca ,
- Ivana Kusan ,
- Thomas W. Kuyper ,
- Carlos Lado ,
- Thomas Laessoe ,
- Patrice Laine ,
- Ewald Langer ,
- Ellen Larsson ,
- Karl-Henrik Larsson ,
- Gary Laursen ,
- Christian Lechat ,
- Serena Lee ,
- James C. Lendemer ,
- Laura Levin ,
- Uwe Lindemann ,
- Hakan Lindstrom ,
- Xingzhong Liu ,
- Regulo Carlos Llarena Hernandez ,
- Esteve Llop ,
- Csaba Locsmandi ,
- Deborah Jean Lodge ,
- Michael Loizides ,
- Laszlo Lokos ,
- Jennifer Luangsa-ard ,
- Matthias Luderitz ,
- Thorsten Lumbsch ,
- Matthias Lutz ,
- Dan Mahoney ,
- Ekaterina Malysheva ,
- Vera Malysheva ,
- Patinjareveettil Manimohan ,
- Yasmina Mann-Felix ,
- Guilhermina Marques ,
- Ruben Martinez-Gil ,
- Guy Marson ,
- Gerardo Mata ,
- P. Brandon Matheny ,
- Geir Harald Mathiassen ,
- Neven Matocec ,
- Helmut Mayrhofer ,
- Mehdi Mehrabi ,
- Ireneia Melo ,
- Armin Mesic ,
- Andrew S. Methven ,
- Otto Miettinen ,
- Ana M. Millanes Romero ,
- Andrew N. Miller ,
- James K. Mitchell ,
- Roland Moberg ,
- Pierre-Arthur Moreau ,
- Gabriel Moreno ,
- Olga Morozova ,
- Asuncion Morte ,
- Lucia Muggia ,
- Guillermo Munoz Gonzalez ,
- Leena Myllys ,
- Istvan Nagy
- Laszlo G. Nagy ,
- Maria Alice Neves ,
- Tuomo Niemela ,
- Pier Luigi Nimis ,
- Nicolas Niveiro ,
- Machiel E. Noordeloos ,
- Anders Nordin ,
- Sara Raouia Noumeur ,
- Yuri Novozhilov ,
- Jorinde Nuytinck ,
- Esteri Ohenoja ,
- Patricia Oliveira Fiuza ,
- Alan Orange ,
- Alexander Ordynets ,
- Beatriz Ortiz-Santana ,
- Leticia Pacheco ,
- Ferenc Pal-Fam ,
- Melissa Palacio ,
- Zdenek Palice ,
- Viktor Papp ,
- Kadri Partel ,
- Julia Pawlowska ,
- Aurelia Paz ,
- Ursula Peintner ,
- Shaun Pennycook ,
- Olinto Liparini Pereira ,
- Pablo Perez Daniels ,
- Miguel A. Perez-De-Gregorio Capella ,
- Carlos Manuel Perez del Amo ,
- Sergio Perez Gorjon ,
- Sergio Perez-Ortega ,
- Israel Perez-Vargas ,
- Brian A. Perry ,
- Jens H. Petersen ,
- Ronald H. Petersen ,
- Donald H. Pfister ,
- Chayanard Phukhamsakda ,
- Marcin Piatek ,
- Meike Piepenbring ,
- Raquel Pino-Bodas ,
- Juan Pablo Pinzon Esquivel ,
- Paul Pirot ,
- Eugene S. Popov ,
- Orlando Popoff ,
- Maria Prieto Alvaro ,
- Christian Printzen ,
- Nadezhda Psurtseva ,
- Witoon Purahong ,
- Luis Quijada ,
- Gerhard Rambold ,
- Natalia A. Ramirez ,
- Huzefa Raja ,
- Olivier Raspe ,
- Tania Raymundo ,
- Martina Reblova ,
- Yury A. Rebriev ,
- Juan de Dios Reyes Garcia ,
- Miguel Angel Ribes Ripoll ,
- Franck Richard ,
- Mike J. Richardson ,
- Victor J. Rico ,
- Gerardo Lucio Robledo ,
- Flavia Rodrigues Barbosa ,
- Cristina Rodriguez-Caycedo ,
- Pamela Rodriguez-Flakus ,
- Anna Ronikier ,
- Luis Rubio Casas ,
- Katerina Rusevska ,
- Gunter Saar ,
- Irja Saar ,
- Isabel Salcedo ,
- Sergio M. Salcedo Martinez ,
- Carlos A. Salvador Montoya ,
- Santiago Sanchez-Ramirez ,
- J. Vladimir Sandoval-Sierra ,
- Sergi Santamaria ,
- Josiane Santana Monteiro ,
- Hans Josef Schroers ,
- Barbara Schulz ,
- Geert Schmidt-Stohn ,
- Trond Schumacher ,
- Beatrice Senn-Irlet ,
- Hana Sevcikova ,
- Oleg Shchepin ,
- Takashi Shirouzu ,
- Anton Shiryaev ,
- Klaus Siepe ,
- Esteban B. Sir ,
- Mohammad Sohrabi ,
- Karl Soop ,
- Viacheslav Spirin ,
- Toby Spribille ,
- Marc Stadler ,
- Joost Stalpers ,
- Soili Stenroos ,
- Ave Suija ,
- Stellan Sunhede ,
- Sten Svantesson ,
- Sigvard Svensson ,
- Tatyana Yu Svetasheva ,
- Krzysztof Swierkosz ,
- Heidi Tamm ,
- Hatira Taskin ,
- Adrien Taudiere ,
- Jan-Olof Tedebrand ,
- Raul Tena Lahoz ,
- Marina Temina ,
- Arne Thell ,
- Marco Thines ,
- Goren Thor ,
- Holger Thus ,
- Leif Tibell ,
- Sanja Tibell ,
- Einar Timdal ,
- Zdenko Tkalcec ,
- Tor Tonsberg ,
- Gerard Trichies ,
- Dagmar Triebel ,
- Andrei Tsurykau ,
- Rodham E. Tulloss ,
- Veera Tuovinen ,
- Miguel Ulloa Sosa ,
- Carlos Urcelay ,
- Francois Valade ,
- Ricardo Valenzuela Garza ,
- Pieter van den Boom ,
- Nicolas Van Vooren ,
- Aida M. Vasco-Palacios ,
- Jukka Vauras ,
- Juan Manuel Velasco Santos ,
- Else Vellinga ,
- Annemieke Verbeken ,
- Per Vetlesen ,
- Alfredo Vizzini ,
- Hermann Voglmayr ,
- Sergey Volobuev ,
- Wolfgang von Brackel ,
- Elena Voronina ,
- Grit Walther ,
- Roy Watling ,
- Evi Weber ,
- Mats Wedin ,
- Oyvind Weholt ,
- Martin Westberg ,
- Eugene Yurchenko ,
- Petr Zehnalek ,
- Huang Zhang ,
- Mikhail P. Zhurbenko ,
- Stefan Ekmani, Uppsala University
Nomenclatural type definitions are one of the most important concepts in biological nomenclature. Being physical objects that can be re-studied by other researchers, types permanently link taxonomy (an artificial agreement to classify biological diversity) with nomenclature (an artificial agreement to name biological diversity). Two proposals to amend the International Code of Nomenclature for algae, fungi, and plants (ICN), allowing DNA sequences alone (of any region and extent) to serve as types of taxon names for voucherless fungi (mainly putative taxa from environmental DNA sequences), have been submitted to be voted on at the 11th International Mycological Congress (Puerto Rico, July 2018). We consider various genetic processes affecting the distribution of alleles among taxa and find that alleles may not consistently and uniquely represent the species within which they are contained. Should the proposals be accepted, the meaning of nomenclatural types would change in a fundamental way from physical objects as sources of data to the data themselves. Such changes are conducive to irreproducible science, the potential typification on artefactual data, and massive creation of names with low information content, ultimately causing nomenclatural instability and unnecessary work for future researchers that would stall future explorations of fungal diversity. We conclude that the acceptance of DNA sequences alone as types of names of taxa, under the terms used in the current proposals, is unnecessary and would not solve the problem of naming putative taxa known only from DNA sequences in a scientifically defensible way. As an alternative, we highlight the use of formulas for naming putative taxa (candidate taxa) that do not require any modification of the ICN.
| Originalsprog | Engelsk |
|---|---|
| Tidsskrift | IMA Fungus |
| Vol/bind | 9 |
| Nummer | 1 |
| Sider (fra-til) | 167-175 |
| Antal sider | 9 |
| ISSN | 2210-6340 |
| DOI | |
| Status | Udgivet - jun. 2018 |
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