Comparative Metatranscriptomics Workflow (CoMW)

Muhammad Zohaib Anwar; Anders Lanzen; Toke Bang-Andreasen; Carsten Suhr Jacobsen

doi:10.24433/CO.1793842.v1

Comparative Metatranscriptomics Workflow (CoMW)

Muhammad Zohaib Anwar (Udvikler), Anders Lanzen (Udvikler), Toke Bang-Andreasen (Andet), Carsten Suhr Jacobsen (Andet)

Publikation: Bidrag der ikke har en tekstform › Softwareprogram › Forskning › peer review

Abstract

Comparative Metatranscriptomics Workflow is a standardized and validated workflow to functionally classify quality filtered mRNA reads from metatranscriptomic or total RNA studies generated using NGS short reads. CoMW is used for classification of these reads using assembled contigs to the reference databases provided and cited.

Originalsprog	Engelsk
Publikationsdato	maj 2019
Publikationsmedier	Internet
DOI	https://doi.org/10.24433/CO.1793842.v1
Status	Udgivet - maj 2019

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10.24433/CO.1793842.v1Licens: GNU GPL

1 Afsluttet

Computational Analysis of Environmental Microbiomes in Action using total RNA
Anwar, M. Z. (Deltager) & Jacobsen, C. S. (Deltager)
31/10/2016 → 15/09/2019
Projekter: Projekt › Forskning

2 Poster
1 Ph.d.-afhandling
1 Tidsskriftartikel
1 Working paper

Deploying a Single Strand of Life to Unravel the Environmental Microbiomes in Action
Anwar, M. Z., okt. 2019, Århus Universitet. 183 s.
Publikation: Bog/antologi/afhandling/rapport › Ph.d.-afhandling
To assemble or not to resemble: A validated Comparative Metatranscriptomics Workflow (CoMW)
Anwar, M. Z., Lanzen, A., Bang-Andreasen, T. & Jacobsen, C. S., 2019, s. 1-10, 10 s.
Publikation: Working paper/Preprint › Working paper › Forskning

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25 Citationer (Scopus)
To assemble or not to resemble-A validated Comparative Metatranscriptomics Workflow (CoMW)
Anwar, M. Z., Lanzen, A., Bang-Andreasen, T. & Jacobsen, C. S., 1 aug. 2019, I: GigaScience. 8, 8, s. 1-10 10 s.
Publikation: Bidrag til tidsskrift/Konferencebidrag i tidsskrift /Bidrag til avis › Tidsskriftartikel › Forskning › peer review

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Citationsformater

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title = "Comparative Metatranscriptomics Workflow (CoMW)",

abstract = "Comparative Metatranscriptomics Workflow is a standardized and validated workflow to functionally classify quality filtered mRNA reads from metatranscriptomic or total RNA studies generated using NGS short reads. CoMW is used for classification of these reads using assembled contigs to the reference databases provided and cited.",

keywords = "Metatranscriptomics, Bioinformatics, Microbial Ecology",

author = "Anwar, {Muhammad Zohaib} and Anders Lanzen and Toke Bang-Andreasen and Jacobsen, {Carsten Suhr}",

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AB - Comparative Metatranscriptomics Workflow is a standardized and validated workflow to functionally classify quality filtered mRNA reads from metatranscriptomic or total RNA studies generated using NGS short reads. CoMW is used for classification of these reads using assembled contigs to the reference databases provided and cited.

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KW - Bioinformatics

KW - Microbial Ecology

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DO - 10.24433/CO.1793842.v1

M3 - Computer programme

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Comparative Metatranscriptomics Workflow (CoMW)

Abstract

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Fingeraftryk

Projekter

Computational Analysis of Environmental Microbiomes in Action using total RNA

Publikation

Deploying a Single Strand of Life to Unravel the Environmental Microbiomes in Action

To assemble or not to resemble: A validated Comparative Metatranscriptomics Workflow (CoMW)

To assemble or not to resemble-A validated Comparative Metatranscriptomics Workflow (CoMW)

Citationsformater