A Kinetic Analysis of the Folding and Unfolding of OmpA in Urea and Guaninidinium Chloride: Single and Parallel Pathways

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A Kinetic Analysis of the Folding and Unfolding of OmpA in Urea and Guaninidinium Chloride : Single and Parallel Pathways. / Andersen, Kell K; Wang, Huabing; Otzen, Daniel.

I: Biochemistry, Bind 51, Nr. 42, 12.09.2012, s. 8371-8383.

Publikation: Bidrag til tidsskrift/Konferencebidrag i tidsskrift /Bidrag til avisTidsskriftartikelForskningpeer review

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Andersen, Kell K ; Wang, Huabing ; Otzen, Daniel. / A Kinetic Analysis of the Folding and Unfolding of OmpA in Urea and Guaninidinium Chloride : Single and Parallel Pathways. I: Biochemistry. 2012 ; Bind 51, Nr. 42. s. 8371-8383.

Bibtex

@article{0bc38d3d80cf44f3b5de4286e8bcb8fc,
title = "A Kinetic Analysis of the Folding and Unfolding of OmpA in Urea and Guaninidinium Chloride: Single and Parallel Pathways",
abstract = "The outer membrane protein OmpA from E. coli can fold into lipid vesicles and surfactant micelles from the urea-denatured state. However, a complete kinetic description of the folding and unfolding of OmpA, which can provide the basis for subsequent protein-engineering studies of the protein's folding pathway, is lacking. Here we use two different denaturants to probe the unfolding mechanism of OmpA in the presence of the surfactant octyl maltoside (OM). Unfolding of OmpA in the presence of micelles, achieved with the potent denaturant GdmCl, leads to single phase unfolding. In contrast, OmpA only unfolds in urea below OM's critical micelle concentration and this occurs in different phases, which we attribute to the existence of states that have bound different amounts of surfactant, from completely {"}naked{"} to partly covered by surfactant. Multiple parallel refolding phases are attributed to different levels of collapse prior to folding. Kinetic results used to derive the stability of OmpA in surfactant, using either urea or GdmCl as the denaturing agent, give comparable results and indicate a minimalist three-state folding scheme involving the denatured state D, a folding intermediate I and the native state N. N and I are stabilized by 15.6 and 2.6 kcal/mol, respectively, relative to D. The periplasmic domain of OmpA does not contribute to stability in surfactant micelles. However, BBP, a minimalist transmembrane β-barrel version of OmpA with shortened loops, is destabilized by ~10 kcal/mol compared to OmpA, highlighting loop contributions to OmpA stability.",
author = "Andersen, {Kell K} and Huabing Wang and Daniel Otzen",
year = "2012",
month = "9",
day = "12",
doi = "10.1021/bi300974y",
language = "English",
volume = "51",
pages = "8371--8383",
journal = "Biochemistry",
issn = "0006-2960",
publisher = "ACS Publications",
number = "42",

}

RIS

TY - JOUR

T1 - A Kinetic Analysis of the Folding and Unfolding of OmpA in Urea and Guaninidinium Chloride

T2 - Single and Parallel Pathways

AU - Andersen, Kell K

AU - Wang, Huabing

AU - Otzen, Daniel

PY - 2012/9/12

Y1 - 2012/9/12

N2 - The outer membrane protein OmpA from E. coli can fold into lipid vesicles and surfactant micelles from the urea-denatured state. However, a complete kinetic description of the folding and unfolding of OmpA, which can provide the basis for subsequent protein-engineering studies of the protein's folding pathway, is lacking. Here we use two different denaturants to probe the unfolding mechanism of OmpA in the presence of the surfactant octyl maltoside (OM). Unfolding of OmpA in the presence of micelles, achieved with the potent denaturant GdmCl, leads to single phase unfolding. In contrast, OmpA only unfolds in urea below OM's critical micelle concentration and this occurs in different phases, which we attribute to the existence of states that have bound different amounts of surfactant, from completely "naked" to partly covered by surfactant. Multiple parallel refolding phases are attributed to different levels of collapse prior to folding. Kinetic results used to derive the stability of OmpA in surfactant, using either urea or GdmCl as the denaturing agent, give comparable results and indicate a minimalist three-state folding scheme involving the denatured state D, a folding intermediate I and the native state N. N and I are stabilized by 15.6 and 2.6 kcal/mol, respectively, relative to D. The periplasmic domain of OmpA does not contribute to stability in surfactant micelles. However, BBP, a minimalist transmembrane β-barrel version of OmpA with shortened loops, is destabilized by ~10 kcal/mol compared to OmpA, highlighting loop contributions to OmpA stability.

AB - The outer membrane protein OmpA from E. coli can fold into lipid vesicles and surfactant micelles from the urea-denatured state. However, a complete kinetic description of the folding and unfolding of OmpA, which can provide the basis for subsequent protein-engineering studies of the protein's folding pathway, is lacking. Here we use two different denaturants to probe the unfolding mechanism of OmpA in the presence of the surfactant octyl maltoside (OM). Unfolding of OmpA in the presence of micelles, achieved with the potent denaturant GdmCl, leads to single phase unfolding. In contrast, OmpA only unfolds in urea below OM's critical micelle concentration and this occurs in different phases, which we attribute to the existence of states that have bound different amounts of surfactant, from completely "naked" to partly covered by surfactant. Multiple parallel refolding phases are attributed to different levels of collapse prior to folding. Kinetic results used to derive the stability of OmpA in surfactant, using either urea or GdmCl as the denaturing agent, give comparable results and indicate a minimalist three-state folding scheme involving the denatured state D, a folding intermediate I and the native state N. N and I are stabilized by 15.6 and 2.6 kcal/mol, respectively, relative to D. The periplasmic domain of OmpA does not contribute to stability in surfactant micelles. However, BBP, a minimalist transmembrane β-barrel version of OmpA with shortened loops, is destabilized by ~10 kcal/mol compared to OmpA, highlighting loop contributions to OmpA stability.

U2 - 10.1021/bi300974y

DO - 10.1021/bi300974y

M3 - Journal article

C2 - 22992178

VL - 51

SP - 8371

EP - 8383

JO - Biochemistry

JF - Biochemistry

SN - 0006-2960

IS - 42

ER -