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Philip Francis Thomsen

Pancrustacean evolution illuminated by taxon-rich genomic-scale data sets with an expanded remipede sampling

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Pancrustacean evolution illuminated by taxon-rich genomic-scale data sets with an expanded remipede sampling. / Lozano-Fernandez, Jesus; Giacomelli, Mattia; Fleming, James; Chen, Albert; Vinther, Jakob; Thomsen, Philip Francis; Glenner, Henrik; Palero, Ferran; Legg, David A; Iliffe, Thomas M; Pisani, Davide; Olesen, Jørgen.

I: Genome Biology and Evolution, 04.07.2019.

Publikation: Bidrag til tidsskrift/Konferencebidrag i tidsskrift /Bidrag til avisTidsskriftartikelForskningpeer review

Harvard

Lozano-Fernandez, J, Giacomelli, M, Fleming, J, Chen, A, Vinther, J, Thomsen, PF, Glenner, H, Palero, F, Legg, DA, Iliffe, TM, Pisani, D & Olesen, J 2019, 'Pancrustacean evolution illuminated by taxon-rich genomic-scale data sets with an expanded remipede sampling', Genome Biology and Evolution. https://doi.org/10.1093/gbe/evz097

APA

Lozano-Fernandez, J., Giacomelli, M., Fleming, J., Chen, A., Vinther, J., Thomsen, P. F., ... Olesen, J. (2019). Pancrustacean evolution illuminated by taxon-rich genomic-scale data sets with an expanded remipede sampling. Genome Biology and Evolution. https://doi.org/10.1093/gbe/evz097

CBE

Lozano-Fernandez J, Giacomelli M, Fleming J, Chen A, Vinther J, Thomsen PF, Glenner H, Palero F, Legg DA, Iliffe TM, Pisani D, Olesen J. 2019. Pancrustacean evolution illuminated by taxon-rich genomic-scale data sets with an expanded remipede sampling. Genome Biology and Evolution. https://doi.org/10.1093/gbe/evz097

MLA

Vancouver

Lozano-Fernandez J, Giacomelli M, Fleming J, Chen A, Vinther J, Thomsen PF o.a. Pancrustacean evolution illuminated by taxon-rich genomic-scale data sets with an expanded remipede sampling. Genome Biology and Evolution. 2019 jul 4. https://doi.org/10.1093/gbe/evz097

Author

Lozano-Fernandez, Jesus ; Giacomelli, Mattia ; Fleming, James ; Chen, Albert ; Vinther, Jakob ; Thomsen, Philip Francis ; Glenner, Henrik ; Palero, Ferran ; Legg, David A ; Iliffe, Thomas M ; Pisani, Davide ; Olesen, Jørgen. / Pancrustacean evolution illuminated by taxon-rich genomic-scale data sets with an expanded remipede sampling. I: Genome Biology and Evolution. 2019.

Bibtex

@article{7fb37d11848a4ba38e7250018c78a32c,
title = "Pancrustacean evolution illuminated by taxon-rich genomic-scale data sets with an expanded remipede sampling",
abstract = "The relationships of crustaceans and hexapods (Pancrustacea) have been much discussed and partially elucidated following the emergence of phylogenomic data sets. However, major uncertainties still remain regarding the position of iconic taxa such as Branchiopoda, Copepoda, Remipedia, and Cephalocarida, and the sister group relationship of hexapods. We assembled the most taxon-rich phylogenomic pancrustacean data set to date and analyzed it using a variety of methodological approaches. We prioritised low levels of missing data and found that some clades were consistently recovered independently of the analytical approach used. These include, for example, Oligostraca and Altocrustacea. Substantial support was also found for Allotriocarida, with Remipedia as the sister of Hexapoda (i.e., Labiocarida), and Branchiopoda as the sister of Labiocarida, a clade that we name Athalassocarida (={"}non-marine shrimps{"}). Within Allotriocarida, Cephalocarida was found as the sister of Athalassocarida. Finally, moderate support was found for Hexanauplia (Copepoda as sister to Thecostraca) in alliance with Malacostraca. Mapping key crustacean tagmosis patterns and developmental characters across the revised phylogeny suggests that the ancestral pancrustacean was relatively short-bodied, with extreme body elongation and anamorphic development emerging later in pancrustacean evolution.",
author = "Jesus Lozano-Fernandez and Mattia Giacomelli and James Fleming and Albert Chen and Jakob Vinther and Thomsen, {Philip Francis} and Henrik Glenner and Ferran Palero and Legg, {David A} and Iliffe, {Thomas M} and Davide Pisani and J{\o}rgen Olesen",
note = "{\circledC} The Author(s) 2019. Published by Oxford University Press on behalf of the Society for Molecular Biology and Evolution.",
year = "2019",
month = "7",
day = "4",
doi = "10.1093/gbe/evz097",
language = "English",
journal = "Genome Biology and Evolution",
issn = "1759-6653",
publisher = "Oxford University Press",

}

RIS

TY - JOUR

T1 - Pancrustacean evolution illuminated by taxon-rich genomic-scale data sets with an expanded remipede sampling

AU - Lozano-Fernandez, Jesus

AU - Giacomelli, Mattia

AU - Fleming, James

AU - Chen, Albert

AU - Vinther, Jakob

AU - Thomsen, Philip Francis

AU - Glenner, Henrik

AU - Palero, Ferran

AU - Legg, David A

AU - Iliffe, Thomas M

AU - Pisani, Davide

AU - Olesen, Jørgen

N1 - © The Author(s) 2019. Published by Oxford University Press on behalf of the Society for Molecular Biology and Evolution.

PY - 2019/7/4

Y1 - 2019/7/4

N2 - The relationships of crustaceans and hexapods (Pancrustacea) have been much discussed and partially elucidated following the emergence of phylogenomic data sets. However, major uncertainties still remain regarding the position of iconic taxa such as Branchiopoda, Copepoda, Remipedia, and Cephalocarida, and the sister group relationship of hexapods. We assembled the most taxon-rich phylogenomic pancrustacean data set to date and analyzed it using a variety of methodological approaches. We prioritised low levels of missing data and found that some clades were consistently recovered independently of the analytical approach used. These include, for example, Oligostraca and Altocrustacea. Substantial support was also found for Allotriocarida, with Remipedia as the sister of Hexapoda (i.e., Labiocarida), and Branchiopoda as the sister of Labiocarida, a clade that we name Athalassocarida (="non-marine shrimps"). Within Allotriocarida, Cephalocarida was found as the sister of Athalassocarida. Finally, moderate support was found for Hexanauplia (Copepoda as sister to Thecostraca) in alliance with Malacostraca. Mapping key crustacean tagmosis patterns and developmental characters across the revised phylogeny suggests that the ancestral pancrustacean was relatively short-bodied, with extreme body elongation and anamorphic development emerging later in pancrustacean evolution.

AB - The relationships of crustaceans and hexapods (Pancrustacea) have been much discussed and partially elucidated following the emergence of phylogenomic data sets. However, major uncertainties still remain regarding the position of iconic taxa such as Branchiopoda, Copepoda, Remipedia, and Cephalocarida, and the sister group relationship of hexapods. We assembled the most taxon-rich phylogenomic pancrustacean data set to date and analyzed it using a variety of methodological approaches. We prioritised low levels of missing data and found that some clades were consistently recovered independently of the analytical approach used. These include, for example, Oligostraca and Altocrustacea. Substantial support was also found for Allotriocarida, with Remipedia as the sister of Hexapoda (i.e., Labiocarida), and Branchiopoda as the sister of Labiocarida, a clade that we name Athalassocarida (="non-marine shrimps"). Within Allotriocarida, Cephalocarida was found as the sister of Athalassocarida. Finally, moderate support was found for Hexanauplia (Copepoda as sister to Thecostraca) in alliance with Malacostraca. Mapping key crustacean tagmosis patterns and developmental characters across the revised phylogeny suggests that the ancestral pancrustacean was relatively short-bodied, with extreme body elongation and anamorphic development emerging later in pancrustacean evolution.

U2 - 10.1093/gbe/evz097

DO - 10.1093/gbe/evz097

M3 - Journal article

JO - Genome Biology and Evolution

JF - Genome Biology and Evolution

SN - 1759-6653

ER -