Projekter pr. år
Personlig profil
Forskning
A full, tenured Professor of Systems Biology and Bioinformatics in the Department of Animal and Veterinary Sciences (ANIVET), Faculty of Technical Sciences, Aarhus University. I am a Theme group coordinator / leader for the Theme 5: Digitalization, Data Science & Bioinformatics @ ANIVET.
I am involved in Research, Innovation, and Education covering my core skills and expertise, namely: Animal Genetics/Genomics, Phenomics, Multiomics, Bioinformatics, Systems Biology and Computational Biology within the fields of Animal and Veterinary Sciences. My current focus is on applications of my core domain expertise across animal production efficiency and resilience, artificial reproductive technologies such as IVF, animal health and welfare (farm and pet animals, poultry), animal biodiversity and preservation & propogation of genetic resources as well as use of animal models for human health & diseases (e.g. pigs for studying human obesity & diabetes).
Previously I was a tenured, full Professor and Head of the Quantitative Genomics, Bioinformatics and Computational-Systems Biology groups at DTU - Technical University of Denmark, and at UCPH - University of Copenhagen for about 13 years (2010-2024). At DTU, I was a head of the Bioinformatics institute and Head of section of quantitative & systems genomics for ca. 2 years. On a secondment to a job while being a professor at DTU, I was a Cheif Technology Officer (CTO) and Head of R&D in a portfolio company owned by Grosvenor Food & AgTech group and operated across UK, USA, and Denmark for ca. 3 years.
Prior to Denmark, I was a principal scientist & head of group in CSIRO Australia, Tenure-track Assistant Professor & head of group in ETH Zurich (Switzerland), Cattle Geneticist at SRUC (SAC) Edinburgh, UK and PhD candidate/Research Assistant at the University of Guelph, Canada, with part of PhD research at the Wageningen University in the Netherlands. I have veterinary medicine (DVM) and veterinary genetics (MVSc) degrees from India where I practiced as a Veterinarian for a few years before starting my PhD in 1994 in Canada.
All these work experiences amount to 30 + years in 7 countries across 4 continents thus very international and combines academia, government, and industry job functions.
Undervisning
I am involved in the new Bachelor and Masters education in Animal science teaching:
1. BSc course (10 ECTS) in Animal Breeding & Reproduction (Spring semesters)
2. MSc course (10 ECTS) in Genomics, Systems Biology and Bioinformatics in Animal Sciences (Spring semesters)
3. MSc course (10 ECTS) in Animal Breeding and Genetics (Autum semesters).
Besides teaching the above courses, I will be offering summer school courses for PhD students / postdocs.
I am a supervisor / co-supervisor of Masters and PhD students.
Arbejdsområder
- Full Professor: In this role, I develop, run and manage several research projects and consortia and international networks in the fields of Genomics, MultiOmics, Systems Biology and Bioinformatics. My current projects involve multiomics data integration & analyses: combined modelling and analyses of genetics/genomics, nutrigenomics, epigenomics, transcriptomics, metabolomics and, metagenomics datasets in conjunction with production/reproduction phenotypes, health/disease outcomes and managemental conditions. I develop and/or use various analytical methods and pipelines recently also including Artificial Intelligence (AI) and Machine Learning (AI-ML) methods. I also lead research project in biodiversity / genetic diversity in cattle. I have strong interests and track-record in international collaborative projects and networks as well as industry collaborations.
- Theme coordinator / leader: I am a theme leader for Theme 5: Digitalization, Data Science & Bioinformatics. Here I work at the institute level, with a co-leader, to bring together interested faculty members to formulate coherent research strategy, joint projects and external stakeholder relations in this domain.
- Teaching: I am involved in one compulsory Bachelor course (10 ECTS) and two compulsory Masters courses (10+10 ECTS) within Animal Science education.
Uddannelse (Akademiske kvalifikationer)
Animal Genetics, PhD, Statistcal Genetics - QTL / Gene Mapping, University of Guelph
Dimissionsdato: 10 jun. 1998
Veterinary Genetics, MVSc, Tamil Nadu Veterinary and Animal Sciences University
Dimissionsdato: 1 dec. 1992
Veterinary Medicine, DVM, Tamil Nadu Veterinary and Animal Sciences University
Dimissionsdato: 1 dec. 1989
Emneord
- Genomforskning
- Systembiologi
- Bioinformatik
- Kvantitativ genetik
- Statistisk genetik
- Forædling/selektion
- Dyrevelfærd
- Veterinærmedicin
- Dyremodeller
- Biomarkører
- Populationsbiologi
- Biostatistik
- Metabolomics
- Transkriptionsanalyse
Fagområder
- Genomics & MultiOmics
- Bioinformatics
- Systems Biology
- Animal Breeding & Genetics
- BioStatistics & Data Science
- Quantitative Genetics
Fingeraftryk
- 1 Lignende profiler
Samarbejde og topforskningsområder i de sidste fem år
-
MOVEC: MultiOmic systems biology of In Vitro and in Vivo produced cattle Embryos and Calves
Kadarmideen, H. (PI)
01/10/2024 → 30/09/2027
Projekter: Projekt › Forskning
-
RumiGEN: Towards improvement of ruminant breeding through genomic and epigenomic approaches
Kadarmideen, H. (PI)
03/05/2021 → 01/05/2026
Projekter: Projekt › Forskning
-
GenART: Genomic Resilience of Local Cattle Breeds under Climate Changes and Artificial Reproductive Technologies (GenART)
Kadarmideen, H. (PI)
01/05/2025 → 31/05/2027
Projekter: Projekt › Forskning
Publikation
-
Effects of in vitro embryo production on the epigenomic profiles of day 15 bovine conceptus
Behrens, T., Balasubramanian, J., Secher, J.B.-M., Ivask, M., Kadarmideen, H. & Rabaglino, M., 31 jan. 2025, I: Reproduction, Fertility and Development. 37, 1, 114.Publikation: Bidrag til tidsskrift/Konferencebidrag i tidsskrift /Bidrag til avis › Konferenceartikel › Forskning › peer review
Åben adgangFil6 Downloads (Pure) -
Identification of trait-associated microRNA modules in liver transcriptome of pig fed with PUFAs-enriched supplementary diet
Pareek, C. S., Sachajko, M., Kalra, G., Sultana, S., Szostak, A., Chalaskiewicz, K., Kepka-Borkowska, K., Poławska, E., Ogłuszka, M., Pierzchała, D., Starzyński, R., Taniguchi, H., Juszczuk-Kubiak, E., Lepczyński, A., Ślaska, B., Kozera, W., Czarnik, U., Wysocki, P., Kadarmideen, H. N. & Te Pas, M. F. W. & 2 flere, , 2025, (E-pub / Early view) I: Journal of Applied Genetics.Publikation: Bidrag til tidsskrift/Konferencebidrag i tidsskrift /Bidrag til avis › Tidsskriftartikel › Forskning › peer review
Åben adgangFil4 Downloads (Pure) -
Enrichment of H3K27ac mediated by changes in pyruvate metabolism in bovine embryos produced in vitro
da Fonseca Junior, A. M., Ispada, J., Juan Ross, P., Kadarmideen, H. & Pecora Milazzoto, M., 21 aug. 2024, I: Animal Reproduction. 21, 3, s. 190 1 s.Publikation: Bidrag til tidsskrift/Konferencebidrag i tidsskrift /Bidrag til avis › Konferenceabstrakt i tidsskrift › Forskning › peer review
Åben adgang -
Epigenomic Crosstalk in H3K27ac Regulation and RNAseq: An Integrative Approach Assessing Metabolically Modulated Bovine Embryos
da Fonseca Junior, A. M., Ispada, J., Juan Ross, P., Kadarmideen, H. & Pecora Milazzoto, M., 17 jul. 2024. 2 s.Publikation: Konferencebidrag › Konferenceabstrakt til konference › Forskning › peer review
-
GEDI: An R Package for Integration of Transcriptomic Data from Multiple Platforms for Bioinformatics Applications
Stokholm, M. N., Rabaglino, M. B. & Kadarmideen, H. N., 25 okt. 2024, I: Current protocols. 4, 10, 10 s., e70046.Publikation: Bidrag til tidsskrift/Konferencebidrag i tidsskrift /Bidrag til avis › Tidsskriftartikel › Forskning › peer review
Åben adgang
Aktiviteter
-
CEO & Founder AVA Genomics Consultancy ApS
Kadarmideen, H. (Deltager)
26 feb. 2016 → …Aktivitet: Præsentationer, medlemskaber, ansættelser, ejerskab og andre aktiviteter › Ansættelse og ejerandele i eksterne virksomheder
-
Frontiers in Genetics (Tidsskrift)
Kadarmideen, H. (Redaktør)
1 mar. 2014 → …Aktivitet: Udgivelse af peer-review og redaktionelt arbejde - typer › Peer reviewer/fagfællebedømmer af manuskripter › Forskning
-
Frontiers in Veterinary Science (Tidsskrift)
Kadarmideen, H. (Redaktør)
1 mar. 2014 → …Aktivitet: Udgivelse af peer-review og redaktionelt arbejde - typer › Peer reviewer/fagfællebedømmer af manuskripter › Forskning