Frank Panitz

Seniorforsker

Profile photo

Frank Panitz

Seniorforsker

  • Institut for Molekylærbiologi og Genetik - Molekylær Genetik og Systembiologi
Postaddresse:
C.F. Møllers Allé 3
1130, 207
8000
Aarhus C
Danmark

E-mail: frank.panitz@mbg.au.dk

Publikationer

Origin and diversification of the plasminogen activation system among chordates

Chana-Muñoz, A., Jendroszek, A., Sønnichsen, M., Wang, T., Ploug, M., Jensen, J. K., Andreasen, P. A., Bendixen, C. & Panitz, F., 17 jan. 2019, I : BMC Evolutionary Biology. 19, 17 s., 27.

eDNA in environmental monitoring

Winding, A., Bang-Andreasen, T., Hansen, L. H., Panitz, F., Krogh, P. H., Krause-Jensen, D., Stæhr, P., Nicolaisen, M., Hendriksen, N. B., Sapkota, R., Santos, S. & Andersen, L. W., 8 jan. 2019, Aarhus Universitet, DCE – Nationalt Center for Miljø og Energi ©. 40 s.

MicroRNA-guided prioritization of genome-wide association signals reveals the importance of microRNA-target gene networks for complex traits in cattle

Fang, L., Sørensen, P., Sahana, G., Panitz, F., Su, G., Zhang, S., Yu, Y., Li, B., Ma, L., Liu, G., Lund, M. S. & Thomsen, B., 19 jun. 2018, I : Scientific Reports. 8, 14 s., 9345.

Meta-analysis of genome-wide association studies for cattle stature identifies common genes that regulate body size in mammals

Bouwman, A. C., Daetwyler, H. D., Chamberlain, A. J., Ponce, C. H., Sargolzaei, M., Schenkel, F. S., Sahana, G., Govignon-Gion, A., Boitard, S., Dolezal, M., Pausch, H., Brøndum, R. F., Bowman, P. J., Thomsen, B., Guldbrandtsen, B., Lund, M. S., Servin, B., Garrick, D. J., Reecy, J., Vilkki, J., Bagnato, A., Wang, M., Hoff, J. L., Schnabel, R. D., Taylor, J. F., Vinkhuyzen, A. A. E., Panitz, F., Bendixen, C., Holm, L. E., Gredler, B., Hozé, C., Boussaha, M., Sanchez, M. P., Rocha, D., Capitan, A., Tribout, T., Barbat, A., Croiseau, P., Drögemüller, C., Jagannathan, V., Vander Jagt, C., Crowley, J. J., Bieber, A., Purfield, D. C., Berry, D. P., Emmerling, R., Götz, K. U., Frischknecht, M., Russ, I., Sölkner, J., van Tassell, C. P., Fries, R., Stothard, P., Veerkamp, R. F., Boichard, D., Goddard, M. E. & Hayes, B. J., mar. 2018, I : Nature Genetics. 50, s. 362-372 11 s.

Differential gene expression in mammary gland epithelial cells between Holstein individuals with high or low α-lactalbumin milk protein content

Holm, L-E., Poulsen, N. A., Thomsen, B., Panitz, F., Larsen, L. B., Le, T. T. T. & Gregersen, V. R., 2018, Proceedings of the World Congress on Genetics Applied to Livestock Production. 4 s. 820

Squalus acanthias NEIL1 (NEIL1) mRNA, partial cds. GenBank Accession No. MH412673

Larsen, K. E., Chana Munoz, A. & Panitz, F., 2018

The first draft reference genome of the American mink (Neovison vison)

Cai, Z., Petersen, B., Sahana, G., Madsen, L. B., Larsen, K., Thomsen, B., Bendixen, C., Lund, M. S., Guldbrandtsen, B. & Panitz, F., 6 nov. 2017, I : Scientific Reports. 7, 1, 10 s., 14564.

Latency transition of plasminogen activator inhibitor type 1 is evolutionarily conserved.

Jendroszek, A., Sønnichsen, M., Chana Munoz, A., Leyman, K., Christensen, A., Petersen, S. V., Bendixen, C., Panitz, F., Andreasen, P. & Jensen, J. K., 30 aug. 2017, I : Thrombosis and Haemostasis. 117, 9, s. 1688-1699 12 s.

Multi-tissue RNA-seq and transcriptome characterisation of the spiny dogfish shark (Squalus acanthias) provides a molecular tool for biological research and reveals new genes involved in osmoregulation.

Chana Munoz, A., Jendroszek, A., Sønnichsen, M., Rune Kristiansen, R., Jensen, J. K., Andreasen, P., Bendixen, C. & Panitz, F., 23 aug. 2017, I : PLOS ONE. 12, 8

Transcriptome dynamics during proliferation and differentiation of porcine primary satellite cells

Jensen, J. H., Madsen, L. B., Panitz, F., Hornshøj, H., Nielsen, R. O., Bendixen, C., Oksbjerg, N. & Thomsen, B., 24 apr. 2017, I : Gene Reports. 7, s. 169-175 7 s.

Fine mapping of a quantitative trait locus

Gregersen, V. R., Madsen, L. B., Poulsen, N. A., Thomsen, B., Panitz, F., Stenholt Hansen, M., Buitenhuis, A. J., Holm, L-E., Larsen, L. B. & Bendixen, C., aug. 2016.

Detection of genetic variation affecting milk coagulation properties in Danish Holstein dairy cattle by analyses of pooled whole-genome sequences from phenotypically extreme samples (pool-seq)

Bertelsen, H. P., Gregersen, V. R., Poulsen, N. A., Nielsen, R. O., Das, A., Madsen, L. B., Buitenhuis, A. J., Holm, L-E., Panitz, F., Larsen, L. B. & Bendixen, C., apr. 2016, I : Journal of Animal Science. 94, 4, s. 1365-1376 12 s.

Fine mapping of a quantitative trait locus

Gregersen, V. R., Madsen, L. B., Poulsen, N. A., Thomsen, B., Panitz, F., Stenholt Hansen, M., Buitenhuis, A. J., Holm, L-E., Larsen, L. B. & Bendixen, C., 2016.

The draft genome sequence of the American mink (Neovison vison) opens new opportunities of genomic research in mink

Cai, Z., Panitz, F., Petersen, B., Sahana, G., Thomsen, B., Bendixen, C., Lund, M. S. & Guldbrandtsen, B., 2016, Proceedings of the XIth International Scientific Congress in Fur Animal Production. s. 131-136 1 s.

A synteny-based draft genome sequence of the forage grass Lolium perenne

Byrne, S., Nagy, I., Pfeifer, M., Armstead, I., Swain, S., Studer, B., Mayer, K., Campbell, J. D., Czaban, A., Hentrup, S., Panitz, F., Bendixen, C., Hedegaard, J., Caccamo, M. & Asp, T., 2015, I : The Plant Journal. 84, 4, s. 816-826 11 s.

Deep sequencing of Danish Holstein dairy cattle for variant detection and insight into potential loss-of-function variants in protein coding genes

Das, A., Panitz, F., Gregersen, V. R., Bendixen, C. & Holm, L-E., 2015, I : B M C Genomics. 16, s. 1-12 12 s., 1043.

Draft Genome Sequence of Clostridium tyrobutyricum Strain DIVETGP, Isolated from Cow's Milk for Grana Padano Production

Soggiu, A., Piras, C., Gaiarsa, S., Bendixen, E., Panitz, F., Bendixen, C., Sassera, D., Brasca, M., Bonizzi, L. & Roncada, P., 2015, I : Genome Announcements. 3, 2, e00213-15.

Genome-wide association study using high-density single nucleotide polymorphism arrays and whole-genome sequences for clinical mastitis traits in dairy cattle

Sahana, G., Guldbrandtsen, B., Thomsen, B., Holm, L-E., Panitz, F., Brøndum, R. F., Bendixen, C. & Lund, M. S., 21 aug. 2014, I : Journal of Dairy Science. 97, 11, s. 7258-7275 18 s.

A 660-Kb Deletion with Antagonistic Effects on Fertility and Milk Production Segregates at High Frequency in Nordic Red Cattle: Additional Evidence for the Common Occurrence of Balancing Selection in Livestock

Kadri, N. K., Sahana, G., Charlier, C., Iso-Touru, T., Guldbrandtsen, B., Karim, L., Nielsen, U. S., Panitz, F., Pedersen, G. A., Schulmann, N., Georges, M., Vilkki, J., Lund, M. S. & Druet, T., 17 aug. 2014. 3 s.

Characterization of Genetic Variation in Icelandic Cattle

Holm, L-E., Das, A., Momeni, J., Panitz, F., Bendixen, C. & Eythorsdottir, E., 17 aug. 2014. 3 s.

Characterization of Genetic Variation in Icelandic Cattle

Holm, L-E., Das, A., Momeni, J., Panitz, F., Bendixen, C. & Eythorsdottir, E., 17 aug. 2014. 1 s.

Copy Number Variation in Brown Swiss Dairy Cattle

Dolezal, M. A., Bagnato, A., Schiavini, F., Santus, E., Holm, L-E., Bendixen, C. & Panitz, F., 17 aug. 2014. 3 s.

Identification and annotation of genetic variants (SNP/Indel) in Danish Jutland cattle

Das, A., Panitz, F. & Holm, L-E., 17 aug. 2014. 3 s.

Identification and annotation of genetic variants (SNP/Indel) in Danish Jutland cattle

Das, A., Panitz, F. & Holm, L-E., 17 aug. 2014. 1 s.

A Draft Sequence Assembly of the Perennial Ryegrass (Lolium perenne) Genome

Byrne, S., Armstead, I., Swain, S. C., Panitz, F., Bendixen, C., Hedegaard, J., Nagy, I., Farrell, J. D., Studer, B., Asp, T. & Cassamo, M., 11 jan. 2014, Proceeding of Plant & Animal Genome XXII: The International Conference on the Status of Plant & Animal Genome Research. San Diego, USA, s. 161-161 1 s.

DNA Methylation Patterns in Two Tissues

Momeni, J., Farajzadeh, L., Madsen, L. B., Larsen, K., Panitz, F. & Bendixen, C., 11 jan. 2014. 1 s.

DNA Methylation Patterns in Two Tissues

Momeni, J., Farajzadeh, L., Madsen, L. B., Larsen, K., Panitz, F. & Bendixen, C., 11 jan. 2014, Proceeding of Plant & Animal Genome XXII: The International Conference on the Status of Plant & Animal Genome Research. San Diego, USA, s. 235-235 1 s.

Multiple Breed Validation of Five QTL Affecting Mastitis Resistance

Vilkki, J., Dolezal, M. A., Sahana, G., Iso-Touru, T., Panitz, F., Fasold, M., Bagnato, A. & Soller, M., 11 jan. 2014. 1 s.

Multiple Breed Validation of Five QTL Affecting Mastitis Resistance

Vilkki, J., Dolezal, M. A., Sahana, G., Iso-Touru, T., Panitz, F., Fasold, M., Bagnato, A. & Soller, M., 11 jan. 2014. 1 s.

A 660-Kb deletion with antagonistic effects on fertility and milk production segregates at high frequency in Nordic Red cattle: Additional evidence for the common occurrence of balancing selection in livestock

Kadri, N. K., Sahana, G., Charlier, C., Iso-Touru, T., Guldbrandtsen, B., Karim, L., Nielsen, U. S., Panitz, F., Aamand, G. P., Schulman, N., Georges, M., Vilkki, J., Lund, M. S. & Druet, T., 2 jan. 2014, I : P L o S Genetics. 10, 1, s. 1-11 11 s., e1004049.

SNP detection workflow for deep re-sequencing data in cattle

Holm, L-E., Dolezal, M. A., Bagnato, A., Vilkki, J. & Panitz, F., 26 aug. 2013, Book of Abstracts of the 64th Annual Meeting of the European Association for Animal Production. 2013 udg. The Netherland: Wageningen Academic Publishers, Bind 19. s. 543 1 s.

SNP detection workflow for deep re-sequencing data in cattle

Holm, L-E., Dolezal, M. A., Bagnato, A., Vilkki, J. & Panitz, F., 26 aug. 2013. 1 s.

Validation of QTL affecting masistis in dairy cattle

Vilkki, J., Dolezal, M., Sahana, G., Bagnato, A., Tafer, H., Iso-Touru, T., Panitz, F., Santus, E. & Soller, M., 26 aug. 2013, Book of Abstracts of the 64th Annual Meeting of the European Association for Animal Production. 2013.. 2013 udg. The Netherland: Wageningen Academic Publishers, Bind 19. s. 538 1 s.

The genome and transcriptome of perennial ryegrass mitochondria

Islam, M. S., Studer, B., Byrne, S., Farrell, J. D., Panitz, F., Bendixen, C., Møller, I. M. & Asp, T., 23 mar. 2013, I : B M C Genomics. 14, 202, 21 s.

Genome Wide Allele Frequency Fingerprints (GWAFFs) of populations via genotyping by sequencing

Byrne, S., Czaban, A., Studer, B., Panitz, F., Bendixen, C. & Asp, T., 4 mar. 2013, I : P L o S One. 8, 3, 10 s., e57438.

Revisiting QTL Affecting Clinical Mastitis by High-Density GWAS and Resequencing in the Finnish Ayrshire Dairy Cattle

Vilkki, J., Iso-Touru, T., Schulman, N. F., Dolezal, M. A., Bagnato, A., Soller, M., Panitz, F. & Holm, L-E., 14 jan. 2013. 1 s.

Permanent Genetic Resources added to Molecular Ecology Resources Database 1 August 2012 - 30 September 2012

Ahanchédé, A., Alfaya, J. E. F., Andersen, L. W., Azam, D., Bautista, M. A. M., Besnard, A-L., Bigatti, G., Bouétard, A., Coutellec, M-A., Ewédjè, E. -E. B. K., Fuseya, R., García-Jiménez, R., Haratian, M., Hardy, O. J., Holm, L-E., Hoy, C. W., Koshimizu, E., Loeschcke, V., López-Márquez, V., Machado, C. A., Machordom, A., Marchi, C., Michel, A. P., Micheneau, C., Mittapalli, O., Nagai, T., Okamoto, N., Pan, Y., Panitz, F., Safaie, N., Sakamoto, T., Sharifnabi, B., Tian, E-W. & Yu, H., jan. 2013, I : Molecular Ecology Resources. 13, 1, s. 158-159

Application of Genome Wide SNP Markers to Estimate the Extent of Linkage Disequilibrium in a Collection of Perennial Ryegrass Genotypes

Byrne, S., Paina, C., Studer, B., Panitz, F., Bendixen, C., Hentrup, S., Jensen, C. & Asp, T., 2013, Plant Biotech Denmark Annual meeting 2013. s. 107 1 s.

Extent of Genome Wide Linkage Disequilibrium in a Collection of Perennial Ryegrass Forage and Turf Genotypes, and Identification of Alleles Differentiating Between Both Types

Byrne, S., Paina, C., Studer, B., Panitz, F., Bendixen, C., Hentrup, S., Jensen, C. S. & Asp, T., 2013. 1 s.

Extent of Genome Wide Linkage Disequilibrium in a Collection of Perennial Ryegrass Forage and Turf Genotypes, and Identification of Alleles Differentiating Between Both Types

Byrne, S., Paina, C., Studer, B., Panitz, F., Bendixen, C., Hentrup, S., Jensen, C. S. & Asp, T., 2013. 1 s.

Integration of mate pair sequences to improve shotgun assemblies of flow-sorted chromosome arms of hexaploid wheat

Belova, T., Zhan, B., Wright, J., Caccamo, M., Asp, T., Simková, H., Kent, M., Bendixen, C., Panitz, F., Lien, S., Doležel, J., Olsen, O-A. & Sandve, S. R., 2013, I : B M C Genomics. 14, s. 222

The genome and transcriptome of perennial ryegrass mitochondria

Islam, M. S., Studer, B., Byrne, S., Farrell, J. D., Panitz, F., Bendixen, C., Møller, I. M. & Asp, T., 2013, Plant Biotech Denmark Annual meeting 2013. s. 108 1 s.

QTL study and expression analysis in a porcine model to identify leanness associated genes

Farajzadeh, L., Gregersen, V. R., Sørensen, K. K., Momeni, J., Zhan, B., Zhang, L., Hedegaard, J., Panitz, F., Hornshøj, H. & Bendixen, C., 17 nov. 2012. 1 s.

Analyses of pig genomes provide insight into porcine demography and evolution

Groenen, M. A. M., Archibald, A. L., Uenishi, H., Tuggle, C. K., Takeuchi, Y., Rothschild, M. F., Rogel-Gaillard, C., Park, C., Milan, D., Megens, H-J., Li, S., Larkin, D. M., Kim, H., Frantz, L. A. F., Caccamo, M., Ahn, H., Aken, B. L., Anselmo, A., Anthon, C., Auvil, L., Badaoui, B., Beattie, C. W., Bendixen, C., Berman, D., Blecha, F., Blomberg, J., Bolund, L., Bosse, M., Botti, S., Zhan, B., Bystrom, M., Capitanu, B., Carvalho-Silva, D., Chardon, P., Chen, C., Cheng, R., Choi, S-H., Chow, W., Clark, R. C., Clee, C., Crooijmans, R. P. M. A., Dawson, H. D., Dehais, P., De Sapio, F., Dibbits, B., Drou, N., Du, Z-Q., Eversole, K., Fadista, J., Fairley, S., Faraut, T., Faulkner, G. J., Fowler, K. E., Fredholm, M., Fritz, E., Gilbert, J. G. R., Giuffra, E., Gorodkin, J., Griffin, D. K., Harrow, J. L., Hayward, A., Howe, K., Hu, Z-L., Humphray, S. J., Hunt, T., Hornshøj, H., Jeon, J-T., Jern, P., Jones, M., Jurka, J., Kanamori, H., Kapetanovic, R., Kim, J., Kim, J-H., Kim, K-W., Kim, T-H., Larson, G., Lee, K., Lee, K-T., Leggett, R., Lewin, H. A., Li, Y., Liu, W., Loveland, J. E., Lu, Y., Lunney, J. K., Ma, J., Madsen, O., Mann, K., Matthews, L., McLaren, S., Morozumi, T., Murtaugh, M. P., Narayan, J., Nguyen, D. T., Ni, P., Oh, S-J., Onteru, S., Panitz, F., Park, E-W., Park, H-S., Pascal, G., Paudel, Y., Perez-Enciso, M., Ramirez-Gonzalez, R., Reecy, J. M., Rodriguez-Zas, S., Rohrer, G. A., Rund, L., Sang, Y., Schachtschneider, K., Schraiber, J. G., Schwartz, J., Scobie, L., Scott, C., Searle, S., Servin, B., Southey, B. R., Sperber, G., Stadler, P., Sweedler, J. V., Tafer, H., Thomsen, B., Wali, R., Wang, J., Wang, J., White, S., Xu, X., Yerle, M., Zhang, G., Zhang, J., Zhang, J., Zhao, S., Rogers, J., Churcher, C. & Schook, L. B., 15 nov. 2012, I : Nature. 491, 7424, s. 393-398 6 s.

No evidence of interallelic non-complementation in the gene complementary sex determiner of the honeybee

Munk, K. T., Panitz, F. & Bendixen, C., 3 sep. 2012, EuroBee 5: 5th European Conference of Apidology. Barth, B., Scharpenberg, H. & Moritz, R. F. A. (red.). Halle an der Saale, s. 245-245 1 s.

Spatio-temporal regulation of ADAR editing during development in porcine neural tissues

Venø, M. T., Bramsen, J. B., Bendixen, C., Panitz, F., Holm, I. E., Öhman, M. & Kjems, J., aug. 2012, I : RNA Biology. 9, 8, s. 1054-1065 12 s.

Using a genotype by sequencing approach to estimate the extent of LD in a perennial ryegrass association population

Byrne, S., Panitz, F., Bendixen, C., Studer, B., Jensen, C. & Asp, T., 4 jun. 2012. 1 s.

De novo sequencing of the perennial ryegrass (Lolium perenne) genome

Byrne, S., Panitz, F., Hedegaard, J., Bendixen, C., Studer, B., Farrell, J. D., Swain, S., Armstead, I., Caccamo, M. & Asp, T., jun. 2012.

Gene-associated markers provide tools for tackling illegal fishing and false eco-certification

Nielsen, E. E., Cariani, A., Aoidh, E. M., Maes, G. E., Milano, I., Ogden, R., Taylor, M., Hemmer-Hansen, J., Babbucci, M., Bargelloni, L., Bekkevold, D., Diopere, E., Grenfell, L., Helyar, S., Limborg, M., Martinsohn, J. T., McEwing, R., Panitz, F., Patarnello, T., Tinti, F., Van Houdt, J. K. J., Volckaert, F. A. M., Waples, R. S., Albin, J. E. J., Vieites Baptista, J. M., Barmintsev, V., Bautista, J. M., Bendixen, C., Bergé, J-P., Blohm, D., Cardazzo, B., Diez, A., Espiñeira, M., Geffen, A. J., Gonzalez, E., González-Lavín, N., Guarniero, I., Jeráme, M., Kochzius, M., Krey, G., Mouchel, O., Negrisolo, E., Piccinetti, C., Puyet, A., Rastorguev, S., Smith, J. P., Trentini, M., Verrez-Bagnis, V., Volkov, A., Zanzi, A. & FishPopTrace consortium, maj 2012, I : Nature Communications. 3, Article no 851, s. 1-6 6 s.

A transcriptome map of perennial ryegrass (Lolium perenne L.)

Studer, B., Byrne, S., Nielsen, R. O., Panitz, F., Bendixen, C., Islam, M. S., Pfeifer, M., Lubberstedt, T. & Asp, T., 18 apr. 2012, I : B M C Genomics. 13, 140, 30 s.

Pig Genome 10.2 Annotation and Gene Prediction using mRNA and microRNA Sequencing

Panitz, F., Hornshøj, H., Nielsen, R. O., Nielsen, M., Thomsen, B. & Bendixen, C., 14 jan. 2012. 1 s.

Characterising Genetic Variation in Lolium perenne Breeding Populations Using a Genotype by Sequencing Approach

Byrne, S., Panitz, F., Bendixen, C., Studer, B. & Asp, T., jan. 2012. 1 s.

De novo Genome Sequencing of Perennial Ryegrass (Lolium perenne)

Byrne, S., Panitz, F., Hedegaard, J., Bendixen, C., Studer, B., Farrell, J. D., Swain, S., Armstead, I., Caccamo, M. & Asp, T., jan. 2012. 1 s.

Molecular genetics of the honey bee

Munk, K. T., Panitz, F. & Bendixen, C., jan. 2012, MBG Annual PhD-days 2012. Aarhus University, s. 26-26 1 s.

Genotyping by Sequencing to resolve allele frequencies in perennial ryegrass breeding populations

Byrne, S., Panitz, F., Bendixen, C., Studer, B. & Asp, T., 2012, Plant Biotech Denmark Annual meeting 2012. s. 82 1 s.

No evidence of interallelic non-complementation in the gene complementary sex determiner of the honeybee

Munk, K. T., Panitz, F. & Bendixen, C., 2012. 1 s.

Purifying selection and molecular adaptation in the genome of Verminephrobacter, the heritable symbiotic bacteria of earthworms

Kjeldsen, K. U., Bataillon, T., Pinel, N., De Mita, S., Lund, M. B., Panitz, F., Bendixen, C., Stahl, D. A. & Schramm, A., 2012, I : Genome Biology and Evolution. 4, 3, s. 307-315 9 s.

SNP Discovery Using Next Generation Transcriptomic Sequencing in Atlantic Herring (Clupea harengus)

Helyar, S. J., Limborg, M., Bekkevold, D., Babbucci, M., van Houdt, J., Maes, G. E., Bargelloni, L., Nielsen, R. O., Taylor, M. I., Ogden, R., Cariani, A., Carvalho, G. R., Consortium, F. & Panitz, F., 2012, I : P L o S One. 7, 8, s. e42089 11 s.

Sequencing and annotation of the perennial ryegrass mitochondrial genome

Islam, M. S., Møller, I. M., Studer, B., Byrne, S., Panitz, F., Bendixen, C. & Asp, T., 2012. 1 s.

The mitochondrial genome in wild-type and cytoplasmic male sterile perennial ryegrassII

Islam, M. S., Møller, I. M., Studer, B., Panitz, F., Bendixen, C. & Asp, T., 2012, MBG Annual PhD-Days 2012. s. 29 1 s.

Novel Tools for Conservation Genomics: Comparing Two High-Throughput Approaches for SNP Discovery in the Transcriptome of the European Hake

Milano, I., Babbucci, M., Panitz, F., Ogden, R., Nielsen, R. O., Taylor, M. I., Helyar, S. J., Carvalho, G. R., Espiñeira, M., Atanassova, M., Tinto, F., Maes, G. E., Patarnello, T., FishPopTrace Consortium & Bargelloni, L., 22 nov. 2011, I : P L o S One. 6, 11, s. e28008 13 s.

Global assessment of genomic variation in cattle by genome resequencing and high-throughput genotyping

Zhan, B., Fadista, J., Thomsen, B., Hedegaard, J., Panitz, F. & Bendixen, C., 14 nov. 2011, I : B M C Genomics. 12, 557, 20 s.

Genotyping by sequencing to determine allele frequencies in Lolium perenne breeding populations

Byrne, S., Panitz, F., Bendixen, C., Studer, B. & Asp, T., 4 sep. 2011, EUCARPIA 29th Fodder Crops and Amenity Grasses Section Meeting: Book of Abstracts. s. 40-40 1 s.

Identification of functional complementary alleles of the gene complementary sex determiner in the honeybee Apis Mellifera

Munk, K. T., Panitz, F. & Bendixen, C., maj 2011, Abstracts of papers presented at the 2011 meeting - Heney Bee Genomics & Biology. Grozinger, C., Mueller, U. & Page, R. (red.). New York: Cold Spring Harbor Laboratory Press, 1 s.

Large-scale development of gene-associated SNP markers for linkage mapping in perennial ryegrass (Lolium perenne L.)

Studer, B., Nielsen, R. O., Panitz, F., Bendixen, C., Lübberstedt, T. & Asp, T., mar. 2011, Plant Biotech Denmark Annual Meeting 2011. s. 107 1 s.

Molecular characterization of cytoplasmic male sterility (CMS) in perennial ryegrass ( Lolium perenne L.)

Islam, M. S., Møller, I. M., Studer, B., Panitz, F., Bendixen, C. & Asp, T., mar. 2011, Plant Biotech Denmark Annual Meeting 2011. s. 108 1 s.

De novo genome sequencing of perennial ryegrass (Lolium perenne)

Byrne, S., Panitz, F., Hedegaard, J., Bendixen, C., Studer, B., Farrell, J. D., Swain, S. C., Armstead, I., Caccamo, M. & Asp, T., 2011, EUCARPIA 29th Fodder Crops and Amenity Grasses Section Meeting. Book of Abstracts. s. 23 1 s.

Characterisation Of The Porcine Lung Transcriptome Using High-Throughput Pyrosequencing

Panitz, F., Nielsen, R. O., Andersen, P. K. & Bendixen, C., 2011. 1 s.

Identification of functional complementary alleles of the gene complementary sex determiner in the honeybee Apis Mellifera

Munk, K. T., Panitz, F. & Bendixen, C., 2011. 1 s.

SNP Discovery In Marine Fish Species By 454 Sequencing

FishPop Trace Consortium, 2011. 1 s.

The mitochondrial genome in wild-type and cytoplasmic male sterile perennial ryegrass

Islam, M. S., Møller, I. M., Studer, B., Panitz, F., Bendixen, C. & Asp, T., 2011. 1 s.

Whole-Genome de novo Sequencing Of Quail And Grey Partridge

Holm, L-E., Panitz, F., Burt, D., Talbot, R., Smith, S., Andersen, L. W. & Bendixen, C., 2011. 1 s.

Genome sequencing of algae and grass: Initial results from the de-novo assembly of Penium Margaritaceum and Lolium Perenne

Panitz, F., Hedegaard, J., Borkhardt, B., Ulvskov, P., Asp, T. & Bendixen, C., 15 sep. 2010, Genome Informatics. Wellcome Trust, s. 85-85 1 s.

Genome sequencing of algae and grass: Initial results from the de-novo assembly of Penium margaritaceum and Lolium Perenne

Panitz, F., Hedegaard, J., Borkhardt, B., Ulvskov, P., Asp, T. & Bendixen, C., 15 sep. 2010. 1 s.

Analysis of global variation in pig: Discovery of novel SNPs by whole genome re-sequencing

Zhan, B., Hedegaard, J., Bendixen, C. & Panitz, F., 2010, Programme and Abstract Book. 1 s.

Analysis of global variation in pig: Discovery of novel SNPs by whole genome re-sequencing

Zhan, B., Hedegaard, J., Bendixen, C. & Panitz, F., 2010. 1 s.

Influence of ZnO on gastrointestinal microbiota of piglets studied by selective culturing, T-RFLP, and metagenome analysis

Højberg, O., Panitz, F. & Jensen, B. B., 2010, Proceedings of the Rowett-INRA 7th joint Symposium - Gut Microbiology: New insights into gut microbial ecosystems. s. 51-51 1 s.

MicroRNA identity and abundance in porcine skeletal muscles determined by deep sequencing:

Nielsen, M., Hansen, J. H., Hedegaard, J., Nielsen, R. O., Panitz, F., Bendixen, C. & Thomsen, B., 2010, I : Animal Genetics. 41, 2, s. 159-168 10 s.

The Draft Genome Sequences of Actinobacillus pleuropneumoniae Serotypes 2 and 6

Zhan, B., Angen, Ø., Hedegaard, J., Bendixen, C. & Panitz, F., 2010, I : Journal of Bacteriology. 192, 21, s. 5846-5847 2 s.

The porcine systemic response to pleuropneumonia studied by transcriptional profi ling of liver and tracheobronchial lung lymph nodes using multiplexed mRNA-Seq

Hedegaard, J., Schou, K. K., Skovgaard, K., Zhan, B., Panitz, F., Hornshøj, H., Heegaard, P. M., Angen, Ø., Boye, M. & Bendixen, C., 2010, Programme and Abstracht Book. s. 129

The porcine systemic response to pleuropneumonia studied by transcriptional profi ling of liver and tracheobronchial lung lymph nodes using multiplexed mRNA-Seq: P5040

Hedegaard, J., Schou, K. K., Skovgaard, K., Zhan, B., Panitz, F., Hornshøj, H., Heegaard, P. M., Angen, Ø., Boye, M. & Bendixen, C., 2010. 1 s.

A robust linkage map of the porcine autosome based on gene-associated SNPs

Vingborg, R. K. K., Gregersen, V. R., Zhan, B., Panitz, F., Hoj, A., Sorensen, K. K., Madsen, L. B., Larsen, K., Hornshøj, H., Wang, X. & Bendixen, C., 2009, I : B M C Genomics. 10, 134, 45 s.

Comparison of assembly strategies for high throughput de novo sequencing of bacterial genomes: Poster U45

Zhan, B., Andersen, P. K., Hedegaard, J., Bendixen, C. & Panitz, F., 2009. 1 s.

Global single nucleotide polymorphism discovery by whole genome sequencing a single: Poster no 47

Zhan, B., Hedegaard, J., Fadista, J., Panitz, F. & Bendixen, C., 2009. 1 s.

Identifying rare genetic variants of milk genes

Pasgaard Bertelsen, H., Andersen, P. K., Nielsen, R. O., Panitz, F. & Bendixen, C., 2009. 1 s.

Influence of ZnO on gastrointestinal microbiota of piglets studied by selective culturing, DNA fingerprints, and metagenome analysis

Højberg, O., Panitz, F. & Jensen, B. B., 2009. 1 s.

MicroRNA identity and abundance in porcine skeletal muscles determined by deep sequencing: Poster no 45

Thomsen, B., Hansen, J. H., Hedegaard, J., Nielsen, R. O., Panitz, F. & Bendixen, C., 2009. 1 s.

Prediction of splice junctions and exon-skipping events in porcine tissues from alignments of next-generation RNA short reads to the genome sequence: Poster no. 27

Hornshøj, H., Panitz, F., Hedegaard, J., Conley, L. N., Nielsen, R. O. & Bendixen, C., 2009. 1 s.

Transcriptomic and proteomic profiling of two porcine tissues using high-throughput technologies

Hornshøj, H., Bendixen, E., Conley, L., Andersen, P. K., Hedegaard, J., Panitz, F. & Bendixen, C., 2009, I : B M C Genomics. 10, 30, 12 s.

Comparing 454-sequencing expression ratios to cDNA microarray and iTRAQ-based proteomics platforms

Hornshøj, H., Panitz, F., Andersen, P. K., Conley, L., Hedegaard, J., Bendixen, E. & Bendixen, C., 22 apr. 2008. 1 s.

Bovine placenta transcript analysis using 454 sequencing

Panitz, F., Andersen, P. K. & Bendixen, C., 2008. 1 s.

Bovine placenta transcript analysis using 454 sequencing

Panitz, F., Andersen, P. K. & Bendixen, C., 2008, Proceedings of ISAG 2008: Poster 2085. 1 s.

Design, Production and Usage of a 25K Porcine Long-Oligo DNA Microarray

Hedegaard, J., Hornshøj, H., Conley, L. N., Panitz, F. & Bendixen, C., 2008, Book of Abstracts of 3rd International Sumposium on Animal Functional Genomics. s. 64

Design, production and usage of a 25K porcine long-oligonucleotide DNA microarray

Hedegaard, J., Hornshøj, H., Conley, L. N., Panitz, F. & Bendixen, C., 2008. 1 s.

Frequence of p53-gene alterations in human renal-cell cancer and correlation with clinical stage

Kuczyk, M. A., Serth, J., Bokemeyer, C., Arendt, H., Jonassen, J., Panitz, F., Hofner, K. & Jonas, U., 2008, I : Aktuelle Urologie. 26, Sp. Iss., s. 47-50 4 s.

Performance of a Genome-wide K Porcine SNP Chip

Gregersen, V. R., Panitz, F., Vingborg, R. K. K., Sørensen, K. K., Stengaard, H., Zhan, B., Høj, A., Grindflek, E., Moe, M., Lien, S., Archibald, A., Hastings, N., Humphrey, S., Dunham, A. & Bendixen, C., 2008, Book of Abstracts of 3rd International Symposium on Animal Functional Genomics. s. 60

Performance of a genome-wide 7K porcine SNP chip

Gregersen, V. R., Panitz, F., Vingborg, R., Sørensen, K. K., Stengaard, H., Zhan, B., Høj, A., Grindflek, E., Moe, M., Lien, S., Archibald, A., Hastings, N., Humphrey, S., Rogers, J., Dunham, A. & Bendixen, C., 2008. 1 s.

Single-tube nested competitive PCR with homologous competitor for quantitation of DNA target sequences: theoretical description of heteroduplex formation, evaluation of sensitivity, precision and linear range of the method

Serth, J., Panitz, F. & Herrmann, H., 2008, I : Nucleic Acids Research. 26, 19, s. 4401-4408

Transcriptional profiling of lupin during seed filling in an attempt to identify GTs with roles in pectic RG-I biosynthesis

Borkhardt, B., Bendixen, C., Panitz, F., Asp, T., Øbro, J., Jørgensen, B., Harholt, J. & Ulvskov, P., 2008. 1 s.

Whole Porcine genome linkage map based on the 7K porcine SNP Chip

Vingborg, R. K. K., Gregersen, V. R., Høj, A., Panitz, F., Zhan, B., Hornshøj, H., Sørensen, K. K. & Bendixen, C., 2008, Proceeding of ISAG 2008: Poster 2081. 1 s.

Whole porcine genome linkage map based on the 7K porcine SNP chip

Vingborg, R., Gregersen, V. R., Høj, A., Panitz, F., Zhan, B., Hornshøj, H., Sørensen, K. K. & Bendixen, C., 2008. 1 s.

Microarray Expression Profiles of 20.000 Genes across 23 Healthy Porcine Tissues

Hornshøj, H., Conley, L. N., Hedegaard, J., Sørensen, P., Panitz, F. & Bendixen, C., 21 nov. 2007, I : P L o S One. 2, 11, s. 1-10 10 s.

Gene activity during secondary cell wall biosynthesis in lupin seeds

Borkhardt, B., Bendixen, C., Panitz, F., Asp, T., Øbro, J., Jørgensen, B. & Harholt, J., 2007, I : Physiologia Plantarum. 130, 4, s. Abstract 106 1 s.

Porcine transcriptome analysis based on 97 non-normalized cDNA libraries and assembly of 1,021,891 expressed sequence tags

Gododkin, J., Cirera, S., Hedegaard, J., Gilchrist, M. J., Panitz, F., Jørgensen, C., Scheibye-Knudsen, K., Arvin, T., Lumholdt, S., Sawera, M., Green, T., Nielsen, B. J., Havgaard, J. H., Rosenkilde, C., Wang, J., Li, H., Li, R., Liu, B., Hu, S., Dong, W., Li, W., Yu, J., Wang, J., Staerfeldt, H-H., Wernersson, R., Madsen, L. B., Thomsen, B., Hornshøj, H., Bujie, Z., Wang, X., Wang, X. F., Bolund, L., Brunak, S., Yang, H., Bendixen, C. & Fredholm, M., 2007, I : Genome Biology (Online Edition). 8, 4, s. R45 1 s.

SNP mining porcine ESTs with MAVIANT, a novel tool for SNP evaluation and annotation

Panitz, F., Stengaard, H., Hornshøj, H., Gorodkin, J., Hedegaard, J., Cirera, S., Thomsen, B., Madsen, L. B., Høj, A., Vingborg, R., Bujie, Z., Wang, X., Wang, X. F., Wernersson, R., Jørgensen, C. B., Scheibye-Knudsen, K., Arvin, T., Lumholdt, S., Sawera, M., Green, T., Nielsen, B. J., Havgaard, J. H., Brunak, S., Fredholm, M. & Bendixen, C., 2007, I : Bioinformatics. 23, 13, s. i387-i391

The use of coded PCR primers enables high-throughput sequencing of multiple homolog amplification products by 454 parallel sequencing

Binladen, J., Gilbert, M. T. P., Bollback, J. P., Panitz, F., Bendixen, C., Nielsen, R. & Willerslev, E., 2007, I : P L o S One. 14, 2, s. 1-9 9 s.

A missense mutation in the bovine SLC35A3 gene, encoding a UDP-N-acetylglucosamine transporter, causes complex vertebral malformation

Thomsen, B., Horn, P., Panitz, F., Bendixen, E., Petersen, A. H., Holm, L-E., Nielsen, V. H., Agerholm, J. S., Arnbjerg, J. & Bendixen, C., 2006, I : Genome Research. 16, s. 97-105 9 s.

Genetic variation of porcine gene expression

Bendixen, C., Gregersen, V., Hedegaard, J., Conley, L., Høj, A. & Panitz, F., 2006, CD-communication C 425, ISAG 2006. <Forlag uden navn>, 1 s.

Genetisk dissektion af ondartet lungesyge hos svin

Hedegaard, J., Panitz, F. & Bendixen, C., 2006, I : Biozoom. 2, s. 25-28 4 s.

Identification of SNPs in cattle using large-scale EST sequencing

Holm, L-E., Bendixen, C. & Panitz, F., 2006, Proceedings of the 30th International Conference on Animal Gentics: B 430. <Forlag uden navn>, s. 57 1 s.

Large-scale generation of ESTs and SNP identification in Danish cattle

Holm, L-E., Bendixen, C. & Panitz, F., 2006, Book of abstracts: CD communication 22-39, 4 pp. WCGALP, s. 207 1 s.

MAVIANT - a Multi-purpose Alignment Viewing and (SNP) Annotation Tool

Panitz, F., Stengaard, H. & Bendixen, C., 2006. 1 s.

SNP discovery from porcine EST sequences - Assessment of medium quality prediction for genotyping applications

Panitz, F., Stengaard, H., Høj, A. & Bendixen, C., 2006, Book of abstracts: CD communication 23-20, 3 pp. WCGALP, s. 223 1 s.

SNP-mapping the porcine genome

Hoj, A., Vingborg, R. K. K., Panitz, F., Bujie, Z., Gregersen, V. R. & Bendixen, C., 2006, Book of abstracts: CD communication 21-16, 4 pp. WCGALP, s. 193 1 s.

An EST-based approach for identifying genes expressed in the intestine and gills of pre-smolt Atlantic salmon (Salmo salar) BMC Genomics

Hagen-Larsen, H., Laerdahl, J. K., Panitz, F., Adzhubei, A. & Høyheim, B., 2005, I : B M C Genomics. 6, 171, s. 1-10 10 s.

Development of porcine microarray platform

Hornshøj, H., Hedegaard, J., Madsen, L. B., Horn, P., Stengaard, H., Panitz, F. & Bendixen, C., 2005, Proceeding 1st European Farm Animal Functional Genomics Workshop. s. 19 1 s.

Large-scale discovery of coding SNPs from Pig Genome Survey sequences

Panitz, F., Hornshøj, H., Stengaard, H., Høj, A., Vingborg, R. K. & Bendixen, C., 2005.

Large-scale discovery of coding SNPs from Pig Genome Survey sequences

Panitz, F., Hornshøj, H., Stengaard, H., Høj, A., Vingborg, R. K. & Bendixen, C., 2005, Proc. 1st European Farm Animal Functional Genomics Workshop. s. 33 1 s.

Analyses of porcine genome data

Panitz, F., Thomsen, B., Hedegaard, J., Madsen, L. B., Høj, A., Stengaard, H., Jensen, H. J., Jonker, M., Bendixen, C. & The Sino-Danish Pig Genome Consortium, 2004, XII Plant & Animal Genomes XII Conference, PAG.

Analysis of Gene Expression Patterns in RN' Pigs Using a 27742 Element Porcine cDNA Microarray

Horn, P., Hornshøj, H., Sørensen, P., Hedegaard, J., Panitz, F. & Bendixen, C., 2004, Proceedings of the 29th International Conference on Animal Genetics. <Forlag uden navn>, s. 59 1 s.

Analysis of Porcine Genome Data

Panitz, F., Thomsen, B., Hedegaard, J., Madsen, L. B., Høj, A., Stengaard, H., Hornshøj, H., Jonker, M. & Bendixen, C., 2004, Proc. Plant & Animal Genomes XII Conference. s. 87 1 s.

Analysis of the pig transcriptome: Poster no 225

Gorodin, J., Cirere, S., Hedegaard, J., Green, T., Sawera, M., Jørgensen, C. B., Panitz, F., Klein, A., Bendixen, C., Yang, H. & Fredholm, M., 2004, Proc. Human Genome Meeting. 1 s.

Comparing body weight measured as single time points versus modelled as a longitudinal trait for QTL detection in pigs

Buitenhuis, A. J., Petersen, A. H., Buitenhuis, B., Lund, M. S., Høj, A., Madsen, L. B., Panitz, F., Labouriau, R. & Bendixen, C., 2004, Book of Abstracts. s. 301 1 s.

Comparison of methods for QTL detection for body weight in pigs: single time point versus longitudinal analyses

Buitenhuis, A. J., Lund, M. S., Petersen, A. H., Madsen, L. B., Panitz, F., Labouriau, R. & Bendixen, C., 2004, Proc. 9th Quantitative Trait Locus Mapping and Marker-Assisted Selection Workshop. s. 27 1 s. (Schriftenreihe, Bind 14).

Evaluation of the Inheritance of the Complex Vertebral Malformation Syndrom by Breeding Studies

Agerholm, J. S., Andersen, O., Almskov, M. B., Bendixen, C., Arnbjerg, J., Aamand, G. P., Nielsen, U. S., Panitz, F. & Petersen, A. H., 2004, I : Acta Veterinaria Scandinavica (Print Edition). 45, s. 113-137 25 s.

Generation of a SNP map for QTL-studies in pig

Høj, A., Vingborg, R., Panitz, F., Hornshøj, H., Madsen, L. B. & Bendixen, C., 2004, Proceedings of the 29th International Conference on Animal Genetics. <Forlag uden navn>, s. 74 1 s.

Identification of a gene causing complex vertebral malformation (CVM) in cattle

Bendixen, C., Horn, P., Panitz, F., Bendixen, E., Petersen, A. H., Holm, L-E., Nielsen, V. H., Agerholm, J. S. & Thomsen, B., 2004, Book of Abstracts. s. 82 1 s.

Identification of the gene causing complex vertebral malformation (CVM) in cattle (Bos taurus)

Thomsen, B., Horn, P., Panitz, F., Bendixen, E., Høj, A., Holm, L-E., Nielsen, V. H. & Bendixen, C., 2004, Proc. Plant & Animal Genomes XII Conference. s. P634 1 s.

Integrated Pig Genome Analysis

Panitz, F., Hornshøj, H., Stengaard, H., Madsen, L. B., Horn, P., Hedegaard, J. & Bendixen, C., 2004, Proc.12th International Conference on Intelligent Systems for Molecular Biology ECCB 2004, 3rd European Conference on Computational Biology. s. 108 1 s.

Mapping and identification of a the CVM-gene in cattle

Bendixen, C., Horn, P., Panitz, F., Bendixen, E., Petersen, A. H., Holm, L-E., Nielsen, V. H., Agerholm, J. S. & Thomsen, B., 2004, Proceedings of the 29th International Conference on Animal Genetics. s. 29 1 s.

SEPON, a Selection and Evaluation Pipeline for OligoNucleotides based on ESTs with a non-target Tm algorithm for reducing cross-hybridization in microarray gene expression experiments

Hornshøj, H., Stengaard, H., Panitz, F. & Bendixen, C., 2004, I : Bioinformatics. 20, 3, s. 428-429 2 s.

SNPs for Genome Scan

Panitz, F., 2004. 1 s.

The Sino-Danish Porcine Genome Project: Genomic Survey and Gene Discovery

Bendixen, C., Panitz, F., Thomsen, B., Hornshøj, H., Fredholm, M., Gorodkin, J., Jørgensen, C. B., Cirera, S., Liu, B., Wang, J., Wang, J., Yang, H. & The Sino-Danish Pig Genome Consortium, 2004, Proceedings of the 29th International Conference on Animal Genetics. <Forlag uden navn>, s. 32

Using thermodynamics to improve prediction of non-target binding activity of oligonucleotides in microarray-based gene expression studies

Hornshøj, H., Stengaard, H., Panitz, F. & Bendixen, C., 2003, Proceedings 6th International Meeting of the Microaaray Gene Expression Data Society. s. 44

Analysis pipeline for large-scale SNP detection in EST sequences

Panitz, F., Madsen, L. B., Stengaard, H. & Bendixen, C., 2002, Proceeding XXVIII ISAG. s. 196 1 s.

Bioinformatics and Sequence Analysis

Panitz, F. & Bendixen, C., 2002, Animal Breeding and Genetics in the 21st Century; Status and Visions for Future Research. Jensen, J. (red.). s. 59-70 12 s. (DIAS report - Animal Husbandry, Bind 38).

Development of a characterized cDNA ressource in Atlantic salmon (Salmo salar)

Holm, L-E., Panitz, F., Høyheim, B., Hagen-Larsen, H., Taggart, J., Cairney, M., Davey, G. C., Martin, S. A., Caplice, N. C., Powell, R. & Bendixen, C., 2002, Proceeding XXVIII ISAG. s. 30 1 s.

EST sequencing in Atlantic salmon

Panitz, F., Holm, L-E., Høyheim, B., Hagen-Larsen, H., Taggart, J., Cairney, M., Davey, G. C., Powell, R. & Bendixen, C., 2002, Proc. 7th WCGALP, 30: CD-rom Communication No 06-14. Editions Quae, s. 517-519

Evaluation of SNPs in the Pig genome

Petersen, A. H., Madsen, L. B., Panitz, F., Stengaard, H. & Bendixen, C., 2002, Proceedings XXVIII ISAG. s. 124 1 s.

Expanded retina territory by midbrain transformation upon overexpression of Six6 (Optx2) in Xenopus embryos

Bernier, G., Panitz, F., Zhou, X., Hollemann, T., Gruss, P. & Pieler, T., 2000, I : Mechanisms of Development. 93, 1-2, s. 59-69 11 s.

In situ hybridization techniques with Xenopus embryos

Hollemann, T., Panitz, F. & Pieler, T., 1999, A Comparative Methods Approach to the Study of Oocytes and Embryos: . Richter, J. D. (red.). USA: Oxford University Press, s. 279-290

Increased levels of human papillomavirus type 16 DNA in a subset of prostate cansers

Serth, J., Panitz, F., Paeslack, U., Kuczyk, M. A. & Jonas, U., 1999, I : Cancer Research. 59, 4, s. 823-825 3 s.

The Spemann organizer-expressed zink finger gene Xegr-1 respons to the MAP kinase/Ets-SRF signal transduction pathway

Panitz, F., Krain, B. & Hollemann, T., 1998, I : E M B O Journal. 17, 15, s. 4414-4425