High quality draft genome sequence of Janthinobacterium psychrotolerans sp. nov., isolated from a frozen freshwater pond

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High quality draft genome sequence of Janthinobacterium psychrotolerans sp. nov., isolated from a frozen freshwater pond. / Gong, Xianzhe; Skrivergaard, Stig; Smed Korsgaard, Benjamin; Schreiber, Lars; Marshall, Ian; Finster, Kai; Schramm, Andreas.

In: Standards in Genomic Sciences, Vol. 12, No. 8, 19.01.2017.

Publication: Research - peer-reviewJournal article

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Gong X, Skrivergaard S, Smed Korsgaard B, Schreiber L, Marshall I, Finster K et al. High quality draft genome sequence of Janthinobacterium psychrotolerans sp. nov., isolated from a frozen freshwater pond. Standards in Genomic Sciences. 2017 Jan 19;12(8). Available from, DOI: 10.1186/s40793-017-0230-x

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Gong, Xianzhe; Skrivergaard, Stig; Smed Korsgaard, Benjamin; Schreiber, Lars; Marshall, Ian; Finster, Kai; Schramm, Andreas / High quality draft genome sequence of Janthinobacterium psychrotolerans sp. nov., isolated from a frozen freshwater pond.

In: Standards in Genomic Sciences, Vol. 12, No. 8, 19.01.2017.

Publication: Research - peer-reviewJournal article

Bibtex

@article{35e35e4802f94f79a7763b287e179af4,
title = "High quality draft genome sequence of Janthinobacterium psychrotolerans sp. nov., isolated from a frozen freshwater pond",
abstract = "Strain S3-2T, isolated from sediment of a frozen freshwater pond, shares 99% 16S rRNA gene sequence identity with strains of the genus Janthinobacterium. Strain S3-2T is a facultative anaerobe that lacks the ability to produce violacein but shows antibiotic resistance, psychrotolerance, incomplete denitrification, and fermentation. The draft genome of strain S3-2T has a size of ~5.8 Mbp and contains 5,297 genes, including 115 RNA genes. Based on the phenotypic properties of the strain, the low in silico DNA-DNA hybridization (DDH) values with related genomes (<35%), and the low whole genome-based average nucleotide identity (ANI) (<86%) with other strains within the genus Janthinobacterium, we propose that strain S3-2T is the type strain (= DSM 102223 = LMG 29653) of a new species within this genus. We propose the name Janthinobacterium psychrotolerans sp. nov. to emphasize the capability of the strain to grow at low temperatures.",
keywords = "Janthinobacterium psychrotolerans, Freshwater sediment, Low temperature, Denitrification, Fermentation",
author = "Xianzhe Gong and Stig Skrivergaard and {Smed Korsgaard}, Benjamin and Lars Schreiber and Ian Marshall and Kai Finster and Andreas Schramm",
year = "2017",
month = "1",
doi = "10.1186/s40793-017-0230-x",
volume = "12",
journal = "Standards in Genomic Sciences",
issn = "1944-3277",
publisher = "BioMed Central Ltd.",
number = "8",

}

RIS

TY - JOUR

T1 - High quality draft genome sequence of Janthinobacterium psychrotolerans sp. nov., isolated from a frozen freshwater pond

AU - Gong,Xianzhe

AU - Skrivergaard,Stig

AU - Smed Korsgaard,Benjamin

AU - Schreiber,Lars

AU - Marshall,Ian

AU - Finster,Kai

AU - Schramm,Andreas

PY - 2017/1/19

Y1 - 2017/1/19

N2 - Strain S3-2T, isolated from sediment of a frozen freshwater pond, shares 99% 16S rRNA gene sequence identity with strains of the genus Janthinobacterium. Strain S3-2T is a facultative anaerobe that lacks the ability to produce violacein but shows antibiotic resistance, psychrotolerance, incomplete denitrification, and fermentation. The draft genome of strain S3-2T has a size of ~5.8 Mbp and contains 5,297 genes, including 115 RNA genes. Based on the phenotypic properties of the strain, the low in silico DNA-DNA hybridization (DDH) values with related genomes (<35%), and the low whole genome-based average nucleotide identity (ANI) (<86%) with other strains within the genus Janthinobacterium, we propose that strain S3-2T is the type strain (= DSM 102223 = LMG 29653) of a new species within this genus. We propose the name Janthinobacterium psychrotolerans sp. nov. to emphasize the capability of the strain to grow at low temperatures.

AB - Strain S3-2T, isolated from sediment of a frozen freshwater pond, shares 99% 16S rRNA gene sequence identity with strains of the genus Janthinobacterium. Strain S3-2T is a facultative anaerobe that lacks the ability to produce violacein but shows antibiotic resistance, psychrotolerance, incomplete denitrification, and fermentation. The draft genome of strain S3-2T has a size of ~5.8 Mbp and contains 5,297 genes, including 115 RNA genes. Based on the phenotypic properties of the strain, the low in silico DNA-DNA hybridization (DDH) values with related genomes (<35%), and the low whole genome-based average nucleotide identity (ANI) (<86%) with other strains within the genus Janthinobacterium, we propose that strain S3-2T is the type strain (= DSM 102223 = LMG 29653) of a new species within this genus. We propose the name Janthinobacterium psychrotolerans sp. nov. to emphasize the capability of the strain to grow at low temperatures.

KW - Janthinobacterium psychrotolerans

KW - Freshwater sediment

KW - Low temperature

KW - Denitrification

KW - Fermentation

U2 - 10.1186/s40793-017-0230-x

DO - 10.1186/s40793-017-0230-x

M3 - Journal article

VL - 12

JO - Standards in Genomic Sciences

T2 - Standards in Genomic Sciences

JF - Standards in Genomic Sciences

SN - 1944-3277

IS - 8

ER -