Bo Barker Jørgensen

  1. 2018
  2. Published

    Single-cell genomics reveals a diverse metabolic potential of uncultivated Desulfatiglans-related Deltaproteobacteria widely distributed in marine sediment. / Jochum, Lara; Schreiber, Lars; Marshall, Ian; Jørgensen, Bo Barker; Schramm, Andreas; Kjeldsen, Kasper Urup.

    In: Frontiers in Microbiology, Vol. 9, 2038, 03.09.2018.

    Research output: Contribution to journal/Conference contribution in journal/Contribution to newspaperJournal articleResearchpeer-review

  3. Published

    Global diffusive fluxes of methane in marine sediments. / Egger, Matthias; Riedinger, Natascha; Mogollon, Jose M.; Jorgensen, Bo Barker.

    In: Nature Geoscience, Vol. 11, No. 6, 06.2018, p. 421-25.

    Research output: Contribution to journal/Conference contribution in journal/Contribution to newspaperJournal articleResearchpeer-review

  4. Published

    Sulfate Transporters in Dissimilatory Sulfate Reducing Microorganisms : A Comparative Genomics Analysis. / Marietou, Angeliki; Roy, Hans; Jorgensen, Bo B.; Kjeldsen, Kasper U.

    In: Frontiers in Microbiology, Vol. 9, 309, 02.03.2018.

    Research output: Contribution to journal/Conference contribution in journal/Contribution to newspaperReviewResearchpeer-review

  5. Published

    Methylotrophic methanogenesis fuels cryptic methane cycling in marine surface sediment. / Xiao, Ke-Qing; Beulig, Felix; Røy, Hans; Jørgensen, Bo Barker; Risgaard-Petersen, Nils.

    In: Limnology and Oceanography, Vol. 63, No. 4, 09.02.2018, p. 1519-1527.

    Research output: Contribution to journal/Conference contribution in journal/Contribution to newspaperJournal articleResearchpeer-review

  6. Published

    Metagenomes from deep Baltic Sea sediments reveal how past and present environmental conditions determine microbial community composition. / Marshall, Ian P G; Karst, Søren M; Nielsen, Per H; Jørgensen, Bo Barker.

    In: Marine Genomics, Vol. 37, 02.2018, p. 58-68.

    Research output: Contribution to journal/Conference contribution in journal/Contribution to newspaperJournal articleResearchpeer-review

  7. Published

    Control on rate and pathway of anaerobic organic carbon degradation in the seabed. / Beulig, Felix; Roy, H.; Glombitza, C.; Jorgensen, B. B.

    In: Proceedings of the National Academy of Sciences of the United States of America, Vol. 115, No. 2, 09.01.2018, p. 367-372.

    Research output: Contribution to journal/Conference contribution in journal/Contribution to newspaperJournal articleResearchpeer-review

  8. 2017
  9. Published

    Depth Distribution and Assembly of Sulfate-Reducing Microbial Communities in Marine Sediments of Aarhus Bay. / Jochum, Lara M.; Chen, Xihan; Lever, Mark A.; Loy, Alexander; Jorgensen, Bo Barker; Schramm, Andreas; Kjeldsen, Kasper U.

    In: Applied and Environmental Microbiology, Vol. 83, No. 23, e01547-17, 12.2017.

    Research output: Contribution to journal/Conference contribution in journal/Contribution to newspaperJournal articleResearchpeer-review

  10. Published

    Microbial life in deep subseafloor coal beds. / Jorgensen, Bo Barker.

    In: Proceedings of the National Academy of Sciences of the United States of America, Vol. 114, No. 44, 01.10.2017, p. 11568-11570.

    Research output: Contribution to journal/Conference contribution in journal/Contribution to newspaperEditorialResearchpeer-review

  11. Published

    Iron-controlled oxidative sulfur cycling recorded in the distribution and isotopic composition of sulfur species in glacially influenced fjord sediments of west Svalbard. / Wehrmann, Laura M.; Riedinger, Natascha; Brunner, Benjamin; Kamyshny, Alexey; Hubert, Casey R. J.; Herbert, Lisa C.; Bruechert, Volker; Jorgensen, Bo Barker; Ferdelman, Timothy G.; Formolo, Michael J.

    In: Chemical Geology, Vol. 466, 05.09.2017, p. 678-695.

    Research output: Contribution to journal/Conference contribution in journal/Contribution to newspaperJournal articleResearchpeer-review

  12. Published

    Size and composition of subseafloor microbial community in the Benguela upwelling area examined from intact membrane lipid and DNA analysis. / Evans, Thomas W.; Woermer, Lars; Lever, Mark A.; Lipp, Julius S.; Lagostina, Lorenzo; Lin, Yu-Shih; Jorgensen, Bo Barker; Hinrichs, Kai-Uwe.

    In: Organic Geochemistry, Vol. 111, 09.2017, p. 86-100.

    Research output: Contribution to journal/Conference contribution in journal/Contribution to newspaperJournal articleResearchpeer-review

  13. Published

    Methylotrophic methanogenesis fuels cryptic methane cycling in marine surface sediment (Aarhus Bay, Denmark). / Xiao, Ke-Qing; Beulig, Felix; Røy, Hans; Jørgensen, Bo Barker; Risgaard-Petersen, Nils.

    2017. Poster session presented at International workshop on MARINE GEOMICROBIOLOGY – A MATTER OF ENERGY, Denmark.

    Research output: Contribution to conferencePosterResearchpeer-review

  14. Published

    Methylotrophic methanogenesis fuels cryptic methane cycling in marine surface sediment (Aarhus Bay, Denmark) (Oral). / Xiao, Ke-Qing; Beulig, Felix; Røy, Hans; Jørgensen, Bo Barker; Risgaard-Petersen, Nils.

    2017. Abstract from Goldschmidt Conference 2017, Paris, France.

    Research output: Contribution to conferenceConference abstract for conferenceResearchpeer-review

  15. Published

    Microbial turnover times in the deep seabed studied by amino acid racemization modelling. / Braun, Stefan; Mhatre, Snehit S; Jaussi, Marion; Røy, Hans; Kjeldsen, Kasper U; Pearce, Christof; Seidenkrantz, Marit-Solveig; Jørgensen, Bo Barker; Lomstein, Bente Aa.

    In: Scientific Reports, Vol. 7, No. 1, 5680, 18.07.2017.

    Research output: Contribution to journal/Conference contribution in journal/Contribution to newspaperJournal articleResearchpeer-review

  16. Published

    Concurrent Methane Production and Oxidation in Surface Sediment from Aarhus Bay, Denmark. / Xiao, Ke-Qing; Beulig, Felix; Kjeldsen, Kasper U.; Jørgensen, Bo B.; Risgaard-Petersen, Nils.

    In: Frontiers in Microbiology, Vol. 8, 1198, 30.06.2017.

    Research output: Contribution to journal/Conference contribution in journal/Contribution to newspaperJournal articleResearchpeer-review

  17. Published

    Bioturbation as a key driver behind the dominance of Bacteria over Archaea in near-surface sediment. / Chen, Xihan; Andersen, Thorbjorn Joest; Morono, Yuki; Inagaki, Fumio; Jorgensen, Bo Barker; Lever, Mark Alexander.

    In: Scientific Reports, Vol. 7, 2400, 25.05.2017.

    Research output: Contribution to journal/Conference contribution in journal/Contribution to newspaperJournal articleResearchpeer-review

  18. Published

    The marine sulfate reducer Desulfobacterium autotrophicum HRM2 can switch between low and high apparent half-saturation constants for dissimilatory sulfate reduction. / Tarpgaard, Irene Harder; Jorgensen, Bo Barker; Kjeldsen, Kasper Urup; Roy, Hans.

    In: F E M S Microbiology Reviews, Vol. 93, No. 4, 012, 04.2017.

    Research output: Contribution to journal/Conference contribution in journal/Contribution to newspaperJournal articleResearchpeer-review

  19. Published

    Microbial community assembly and evolution in subseafloor sediment. / Starnawski, Piotr; Bataillon, Thomas; Ettema, Thijs J G; Jochum, Lara M.; Schreiber, Lars; Chen, Xihan; Lever, Mark A.; Polz, Martin F.; Jørgensen, Bo B.; Schramm, Andreas; Kjeldsen, Kasper U.

    In: Proceedings of the National Academy of Sciences of the United States of America, Vol. 114, No. 11, 14.03.2017, p. 2940-2945.

    Research output: Contribution to journal/Conference contribution in journal/Contribution to newspaperJournal articleResearchpeer-review

  20. Published

    Estimating the abundance of endospores of sulfate-reducing bacteria in environmental samples by inducing germination and exponential growth. / Rezende, Julia Rosa de; Hubert, Casey RJ; Røy, Hans; Kjeldsen, Kasper Urup; Jørgensen, Bo Barker.

    In: Geomicrobiology Journal, Vol. 34, No. 4, 2017, p. 338-345.

    Research output: Contribution to journal/Conference contribution in journal/Contribution to newspaperJournal articleResearchpeer-review

  21. Published

    Identity, abundance and reactivation kinetics of thermophilic fermentative endospores in cold marine sediment and seawater. / Volpi, Marta; Lomstein, Bente Aagaard; Sichert , Andreas ; Røy, Hans; Jørgensen, Bo Barker; Kjeldsen, Kasper Urup.

    In: Frontiers in Microbiology, Vol. 8, 131, 2017.

    Research output: Contribution to journal/Conference contribution in journal/Contribution to newspaperJournal articleResearchpeer-review

  22. Published

    Iron oxide reduction in methane-rich deep Baltic Sea sediments. / Egger, Matthias; Hagens, Mathilde; Sapart, Celia J.; Dijkstra; Van Helmond, Niels A.G.M.; Mogollón, Jose M.; Risgaard-Petersen, Nils; van der Veen, Carina; Kasten, S.; Riedinger, Natascha; Bottcher; Rockmann, Thomas; Jørgensen, Bo Barker; Slomp, Caroline P.

    In: Geochimica et Cosmochimica Acta, Vol. 207, 2017, p. 256-276.

    Research output: Contribution to journal/Conference contribution in journal/Contribution to newspaperJournal articleResearchpeer-review

  23. Published

    Thriving or Surviving? Evaluating active microbial guilds in Baltic Sea sediment. / Zinke, Laura A; Mullis, Megan M; Bird, Jordan T; Marshall, Ian P G; Jørgensen, Bo Barker; Lloyd, Karen G; Amend, Jan P; Reese, Brandi Kiel.

    In: Environmental Microbiology Reports, Vol. 9, No. 5, 2017.

    Research output: Contribution to journal/Conference contribution in journal/Contribution to newspaperJournal articleResearchpeer-review

  24. 2016
  25. Published

    A Holocene history of dynamic water column redox conditions in the Landsort Deep, Baltic Sea. / Hardisty, Dalton S.; Riedinger, Natascha; Planavsky, Noah J.; Asael, Dan; Andren, Thomas; Jorgensen, Bo B.; Lyons, Timothy W.

    In: American Journal of Science, Vol. 316, No. 8, 10.2016, p. 713-745.

    Research output: Contribution to journal/Conference contribution in journal/Contribution to newspaperJournal articleResearchpeer-review

  26. Published

    Evidence for the Existence of Autotrophic Nitrate-Reducing Fe(II)-Oxidizing Bacteria in Marine Coastal Sediment. / Laufer, Katja; Roy, Hans; Jorgensen, Bo Barker; Kappler, Andreas.

    In: Applied and Environmental Microbiology, Vol. 82, No. 20, 10.2016, p. 6120-6131.

    Research output: Contribution to journal/Conference contribution in journal/Contribution to newspaperJournal articleResearchpeer-review

  27. Published

    Anaerobic microbial Fe(II) oxidation and Fe(III) reduction in coastal marine sediments controlled by organic carbon content. / Laufer, Katja; Byrne, James M; Glombitza, Clemens; Schmidt, Caroline; Jørgensen, Bo Barker; Kappler, Andreas.

    In: Environmental Microbiology, Vol. 18, No. 9, 09.2016, p. 3159-74.

    Research output: Contribution to journal/Conference contribution in journal/Contribution to newspaperJournal articleResearchpeer-review

  28. Published

    Size and Carbon Content of Sub-seafloor Microbial Cells at Landsort Deep, Baltic Sea. / Braun, Stefan; Morono, Yuki; Littmann, Sten; Kuypers, Marcel M M; Aslan, Hüsnü; Dong, MD; Jørgensen, Bo Barker; Lomstein, Bente Aagaard.

    In: Frontiers in Microbiology, Vol. 7, 1375, 31.08.2016, p. 1-13.

    Research output: Contribution to journal/Conference contribution in journal/Contribution to newspaperJournal articleResearchpeer-review

  29. Published

    Evidence of active methanogenesis in surface sediment from Aarhus Bay, Denmark. / Xiao, Ke-Qing; Beulig, Felix; Kjeldsen, Kasper Urup; Røy, Hans; Jørgensen, Bo Barker; Risgaard-Petersen, Nils.

    2016. Poster session presented at 16th International Symposium on Microbial Ecology, Montreal, Canada.

    Research output: Contribution to conferencePosterResearchpeer-review

  30. Published

    Cellular content of biomolecules in sub-seafloor microbial communities. / Braun, Stefan; Morono, Yuki; Becker, Kevin W.; Hinrichs, Kai-Uwe; Kjeldsen, Kasper Urup; Jørgensen, Bo Barker; Lomstein, Bente Aagaard.

    In: Geochimica et Cosmochimica Acta, Vol. 188, 17.06.2016, p. 330-351.

    Research output: Contribution to journal/Conference contribution in journal/Contribution to newspaperJournal articleResearchpeer-review

  31. Published

    D:L-amino acid modeled turnover of microbial biomass. / Lomstein, Bente Aagaard; Mhatre, Snehit; Jørgensen, Bo Barker; Braun, Stefan.

    2016. Abstract from Goldschmidt Yokohama 2016, Yokohama, Japan.

    Research output: Contribution to conferenceConference abstract for conferenceResearch

  32. Published

    Study of microbial activity in marine sediments of the Iceland Basin. / Mhatre, Snehit; Jaussi, Marion; Jørgensen, Bo Barker; Lomstein, Bente Aagaard.

    2016. Abstract from Goldschmidt Yokohama 2016, Yokohama, Japan.

    Research output: Contribution to conferenceConference abstract for conferenceResearch

  33. Published

    Volatile Fatty Acids, key intermediates for microbial metabolism in subsurface sediments – generation and fate. / Glombitza, Clemens; Røy, Hans; Mangelsdorf, Kai; Horsfield, Brian; Jørgensen, Bo Barker.

    2016.

    Research output: Contribution to conferenceConference abstract for conferenceResearch

  34. Published

    Single-Cell Genome and Group-Specific dsrAB Sequencing Implicate Marine Members of the Class Dehalococcoidia (Phylum Chloroflexi) in Sulfur Cycling. / Wasmund, Kenneth; Cooper, Myriel; Schreiber, Lars; Lloyd, Karen G.; Baker, Brett J.; Petersen, Dorthe Groth; Jørgensen, Bo Barker; Stepanauskas, Ramunas; Reinhardt, Richard; Schramm, Andreas; Loy, Alexander; Adrian, Lorenz.

    In: mBio (Online), Vol. 7, No. 3, e00266-16, 03.05.2016.

    Research output: Contribution to journal/Conference contribution in journal/Contribution to newspaperJournal articleResearchpeer-review

  35. Published

    Coexistence of Microaerophilic, Nitrate-Reducing, and Phototrophic Fe(II) Oxidizers and Fe(III) Reducers in Coastal Marine Sediment. / Laufer, Katja; Nordhoff, Mark; Røy, Hans; Schmidt, Caroline; Behrens, Sebastian; Jørgensen, Bo Barker; Kappler, Andreas.

    In: Applied and Environmental Microbiology, Vol. 82, No. 5, 03.2016, p. 1433-47.

    Research output: Contribution to journal/Conference contribution in journal/Contribution to newspaperJournal articleResearchpeer-review

  36. Published

    Slow Microbial Life in the Seabed. / Jørgensen, Bo Barker; Marshall, Ian P G.

    In: Annual Review of Marine Science, Vol. 8, 08.01.2016, p. 311-332.

    Research output: Contribution to journal/Conference contribution in journal/Contribution to newspaperJournal articleResearchpeer-review

  37. Published

    Activity and community structures of sulfate-reducing microorganisms in polar, temperate and tropical marine sediments. / Robador, Alberto; Müller, Albert L; Sawicka, Joanna E; Berry, David; Hubert, Casey R J; Loy, Alexander; Jørgensen, Bo Barker; Brüchert, Volker.

    In: The I S M E Journal, Vol. 10, 2016.

    Research output: Contribution to journal/Conference contribution in journal/Contribution to newspaperJournal articleResearchpeer-review

  38. Published

    Controls on subsurface methane fluxes and shallow gas formation in Baltic Sea sediment (Aarhus Bay, Denmark). / Flury, Sabine; Røy, Hans; Dale, Andrew W.; Fossing, Henrik; Toth, Zsuzsanna; Spiess, Volkhard; Jensen, Jørn Bo; Jorgensen, Bo Barker.

    In: Geochimica et Cosmochimica Acta, Vol. 188, 2016, p. 297-309.

    Research output: Contribution to journal/Conference contribution in journal/Contribution to newspaperJournal articleResearchpeer-review

  39. Published

    Identity, abundance and reactivation kinetics of thermophilic fermentative endospores in marine sediment and seawater. / Volpi, Marta; Lomstein, Bente Aagaard; Sichert, A; Røy, Hans; Jørgensen, Bo Barker; Kjeldsen, Kasper Urup.

    2016. Poster session presented at ISME 16 - 16th International Symposium on Microbial Ecology, Montreal, Canada.

    Research output: Contribution to conferencePosterResearchpeer-review

  40. Published

    Off Limits: Sulfate below the Sulfate-Methane Transition. / Brunner, Benjamin; Arnold, Gail Lee; Røy, Hans; Müller, Inigo A.; Jørgensen, Bo Barker.

    In: Frontiers of Earth Science, Vol. 4, 2016, p. 75.

    Research output: Contribution to journal/Conference contribution in journal/Contribution to newspaperJournal articleResearchpeer-review

  41. Published

    Phylogeny and physiology of candidate phylum 'Atribacteria' (OP9/JS1) inferred from cultivation-independent genomics. / Nobu, Masaru K; Dodsworth, Jeremy A; Murugapiran, Senthil K; Rinke, Christian; Gies, Esther A; Webster, Gordon; Schwientek, Patrick; Kille, Peter; Parkes, R John; Sass, Henrik; Jørgensen, Bo B; Weightman, Andrew J; Liu, Wen-Tso; Hallam, Steven J; Tsiamis, George; Woyke, Tanja; Hedlund, Brian P.

    In: I S M E Journal, Vol. 10, No. 2, 2016, p. 273-86.

    Research output: Contribution to journal/Conference contribution in journal/Contribution to newspaperJournal articleResearchpeer-review

  42. Published

    Transcriptional analysis of sulfate reducing and chemolithoautotrophic sulfur oxidizing bacteria in the deep subseafloor. / Orsi, William D; Jørgensen, Bo Barker; Biddle, Jennifer.

    In: Environmental Microbiology Reports, Vol. 8, No. 4, 2016, p. 452-460.

    Research output: Contribution to journal/Conference contribution in journal/Contribution to newspaperJournal articleResearchpeer-review

  43. 2015
  44. Published

    IODP expedition 347: Baltic Sea basin paleoenvironment and biosphere. / Andrén, T; Jørgensen, Bo Barker; Cotterill, Carol; Green, S; IODP expedition 347 scientific party.

    In: Scientific Drilling, Vol. 20, 17.12.2015, p. 1-12.

    Research output: Contribution to journal/Conference contribution in journal/Contribution to newspaperJournal articleResearchpeer-review

  45. Published

    Bacterial Growth, Necromass Turnover, and Endespore Abundance in the Deep Subseafloor off the Greenland Shelf using D:L-Amino Acid Model. / Mhatre, Snehit; Braun, Stefan; Jaussi, Marion; Røy, Hans; Jørgensen, Bo Barker; Lomstein, Bente Aagaard.

    2015. Abstract from 48th Annual American Geophysical Union Fall Meeting 2015, San Francisco, United States.

    Research output: Contribution to conferenceConference abstract for conferenceResearch

  46. Published

    D:L-amino acids and the turnover of microbial biomass. / Lomstein, Bente Aagaard; Braun, Stefan; Mhatre, Snehit; Jørgensen, Bo Barker.

    2015. Abstract from 48th Annual American Geophysical Union , San Francisco, United States.

    Research output: Contribution to conferenceConference abstract for conferenceResearch

  47. Published

    Ubiquitous presence and novel diversity of anaerobic alkane degraders in cold marine sediments. / Gittel, Antje; Donhauser, Johanna; Røy, Hans; Girguis, Peter R.; Jørgensen, Bo Barker; Kjeldsen, Kasper Urup.

    In: Frontiers in Microbiology, Vol. 6, 1414, 12.2015.

    Research output: Contribution to journal/Conference contribution in journal/Contribution to newspaperJournal articleResearchpeer-review

  48. Published

    Origin, dynamics, and implications of extracellular DNA pools in marine sediments. / Torti, Andrea; Lever, Mark Alexander; Jørgensen, Bo Barker.

    In: Marine Genomics, Vol. 24, No. 3, 06.10.2015, p. 185-196.

    Research output: Contribution to journal/Conference contribution in journal/Contribution to newspaperJournal articleResearchpeer-review

  49. Published

    What is the lower limit for cellular metabolic rates? / Jaussi, Marion; Kjeldsen, Kasper Urup; Seidenkrantz, Marit-Solveig; Lomstein, Bente Aagaard; Jørgensen, Bo Barker; Røy, Hans.

    2015. Poster session presented at MICROENERGY 2015, Sandbjerg, Denmark.

    Research output: Contribution to conferencePosterResearch

  50. Published

    Formate, acetate, and propionate as substrates for sulfate reduction in sub-arctic sediments of Southwest Greenland. / Glombitza, Clemens; Jaussi, Marion; Røy, Hans; Seidenkrantz, Marit-Solveig; Lomstein, Bente Aagaard; Jørgensen, Bo Barker.

    In: Frontiers in Microbiology, Vol. 6, No. AUG, 846, 24.08.2015.

    Research output: Contribution to journal/Conference contribution in journal/Contribution to newspaperJournal articleResearchpeer-review

  51. Published

    Uncultured Desulfobacteraceae and Crenarchaeotal group C3 incorporate (13) C-acetate in coastal marine sediment. / Na, Hyunsoo; Lever, Mark Alexander; Kjeldsen, Kasper Urup; Schulz, Frederik; Jørgensen, Bo Barker.

    In: Environmental Microbiology Reports, Vol. 7, No. 4, 08.2015, p. 614-22.

    Research output: Contribution to journal/Conference contribution in journal/Contribution to newspaperJournal articleResearchpeer-review

  52. Published

    Wide-spread distribution of 1-methylalkylsuccinate synthase (masD) gene phylotypes in hydrocarbon seepage-impacted and pristine marine sediments. / Gittel, Antje; Donhauser, Johanna; Kjeldsen, Kasper Urup; Røy, Hans; Girguis, Peter R.; Jørgensen, Bo Barker.

    2015. Poster session presented at Gordon Research Seminar & Conference, South Hadely, United States.

    Research output: Contribution to conferencePosterResearchpeer-review

  53. Published

    Anaerobic oxidation of short­-chain hydrocarbons in marine sediments: Microbial targets in oil and gas exploration. / Gittel, Antje; Donhauser, Johanna; Kjeldsen, Kasper Urup; Røy, Hans; Jørgensen, Bo Barker.

    2015. Poster session presented at International Symposium on Applied Microbiology and Molecular Biology in Oil Systems(ISMOS-5), Stavanger, Norway.

    Research output: Contribution to conferencePosterResearchpeer-review

  54. Published

    Sulfate reduction rates and the size of the sulfate-reducer community are tightly linked in the subsurface of an arctic fjord (Greenland). / Jaussi, Marion; Kjeldsen, Kasper Urup; Seidenkrantz, Marit-Solveig; Lomstein, Bente Aagaard; Jørgensen, Bo Barker; Røy, Hans.

    2015. Abstract from EMBO Workshop on Microbial Sulfur Metabolism, Helsingør, Denmark.

    Research output: Contribution to conferenceConference abstract for conferenceResearch

  55. Published

    Life under extreme energy limitation : a synthesis of laboratory- and field-based investigations. / Lever, Mark A; Rogers, Karyn L; Lloyd, Karen G; Overmann, Jörg; Schink, Bernhard; Thauer, Rudolf K; Hoehler, Tori M; Jørgensen, Bo Barker.

    In: F E M S Microbiology Reviews, Vol. 39, No. 5, 20.05.2015, p. 688-728.

    Research output: Contribution to journal/Conference contribution in journal/Contribution to newspaperJournal articleResearchpeer-review

  56. Published

    Sulfate-­reducing alkane degraders in cold marine surficial sediments: Microbial targets in oil and gas exploration. / Gittel, Antje; Donhauser, Johanna; Kjeldsen, Kasper Urup; Røy, Hans; Jørgensen, Bo Barker.

    2015. Poster session presented at EMBO Workshop on Microbial Sulfur Metabolism, Helsingør, Denmark.

    Research output: Contribution to conferencePosterResearchpeer-review

  57. Published

    Estimating the methane flux distribution in marine sediments of the Bornholm Basin, Baltic Sea by combining sediment acoustics with direct methane measurements. / Hilligsøe, Karen Marie; Ferdelman, Timothy G.; Fossing, Henrik; Jensen, Jørn Bo; Rotschi, Julie; Røy, Hans; Jørgensen, Bo Barker.

    2015. Abstract from 18. Danske Havforskermøde, Copenhagen, Denmark.

    Research output: Contribution to conferenceConference abstract for conferenceResearch

  58. Published

    Ammonia-oxidizing Bacteria of the Nitrosospira Cluster 1 Dominate over Ammonia-oxidizing Archaea in Oligotrophic Surface Sediments near the South Atlantic Gyre. / Lagostina, Lorenzo; Goldhammer, Tobias; Røy, Hans; Evans, Thomas W; Lever, Mark; Jørgensen, Bo B; Petersen, Dorthe G; Schramm, Andreas; Schreiber, Lars.

    In: Environmental Microbiology Reports, Vol. 7, No. 3, 08.01.2015, p. 404-413.

    Research output: Contribution to journal/Conference contribution in journal/Contribution to newspaperJournal articleResearchpeer-review

  59. Published

    A modular method for the extraction of DNA and RNA, and the separation of DNA pools from diverse environmental sample types. / Lever, Mark; Torti, Andrea; Eickenbusch, Philip; Michaud, Alexander B; Santl-Temkiv, Tina; Jørgensen, Bo Barker.

    In: Frontiers in Microbiology, Vol. 6, 476, 2015.

    Research output: Contribution to journal/Conference contribution in journal/Contribution to newspaperJournal articleResearchpeer-review

  60. Published

    Analysis of biomolecules of sub-seafloor microbial cells seperated from the sediment matrix. / Braun, Stefan; Morono, Yuki; Hinrichs, K.U.; Jørgensen, Bo Barker; Lomstein, Bente Aagaard.

    2015. Poster session presented at International Workshop on Microbial Life under Extreme Energy Limitation, Sonderborg, Denmark.

    Research output: Contribution to conferencePosterResearchpeer-review

  61. Published

    IODP Baltic Sea Expedition Report. / Andrén, T; Jørgensen, Bo Barker; Cotterill, C; Green, S.

    In: Integrated Ocean Drilling Program. Proceedings. Expedition Reports, Vol. 347, 2015.

    Research output: Contribution to journal/Conference contribution in journal/Contribution to newspaperJournal articleResearchpeer-review

  62. Published

    Methanogenic archaea and sulfate reducing bacteria co-cultured on acetate : teamwork or coexistence? / Ozuolmez, Derya; Na, Hyunsoo; Lever, Mark A; Kjeldsen, Kasper U; Jørgensen, Bo B; Plugge, Caroline M.

    In: Frontiers in Microbiology, Vol. 6, 492, 2015.

    Research output: Contribution to journal/Conference contribution in journal/Contribution to newspaperJournal articleResearchpeer-review

  63. Published

    Study of microbial activity in marine sediments of the Island Basin using D:L-amino acid model. / Mhatre, Snehit; Jørgensen, Bo Barker; Lomstein, Bente Aagaard.

    2015. Abstract from International Workshop on Microbial Life under Extreme Energy Limitation, Sonderborg, Denmark.

    Research output: Contribution to conferenceConference abstract for conferenceResearch

  64. Published

    Viral activities and life-cycles in deep subseafloor sediment. / Engelhardt, Tim; Orsi, William D; Jørgensen, Bo Barker.

    In: Environmental Microbiology Reports, Vol. 7, No. 6, 2015, p. 868-873.

    Research output: Contribution to journal/Conference contribution in journal/Contribution to newspaperJournal articleResearchpeer-review

  65. 2014
  66. Published

    Acetate and other Volatile Fatty Acids – Key intermediates in marine sediment metabolism - Thermodynamic and kinetic implications. / Glombitza, Clemens; Jaussi, Marion; Røy, Hans; Jørgensen, Bo Barker.

    2014. Abstract from AGU Fall Meeting, San Francisco, United States.

    Research output: Contribution to conferenceConference abstract for conferenceResearch

  67. Published

    Direct analysis of volatile fatty acids in marine sediment porewater by two-dimensional ion chromatography-mass spectrometry. / Glombitza, Clemens; Pedersen, Jeanette; Røy, Hans; Jørgensen, Bo Barker.

    In: Limnology and Oceanography: Methods, Vol. 12, 07.2014, p. 455-468.

    Research output: Contribution to journal/Conference contribution in journal/Contribution to newspaperJournal articleResearchpeer-review

  68. Published

    Succession of cable bacteria and electric currents in marine sediment. / Schauer, Regina; Risgaard-Petersen, Nils; Kjeldsen, Kasper Urup; Bjerg, Jesper Jensen; Jørgensen, Bo Barker; Schramm, Andreas; Nielsen, Lars Peter.

    In: I S M E Journal, Vol. 8, 23.01.2014, p. 1314-1322.

    Research output: Contribution to journal/Conference contribution in journal/Contribution to newspaperJournal articleResearchpeer-review

  69. Published

    Baltic Sea Basin Paleoenvironment : paleoenvironmental evolution of the Baltic Sea Basin through the last glacial cycle. / Expedition 347 Scientists ; Jørgensen (Contributor), Bo Barker; Fanget (Contributor), Anne-Sophie; Marshall (Contributor), Ian; Torti (Contributor), Andrea.

    Integrated Ocean Drilling Program, 2014. 102 p.

    Research output: Book/anthology/dissertation/reportReportResearchpeer-review

  70. Published

    Determination of dissimilatory sulfate reduction rates in marine sediment via radioactive 35S tracer. / Røy, Hans; Weber, Hannah; Tarpgaard, Irene Harder; Ferdelmann, T. G.; Jørgensen, Bo Barker.

    In: Limnology and Oceanography: Methods, Vol. 12, No. 4, 2014, p. 196-211.

    Research output: Contribution to journal/Conference contribution in journal/Contribution to newspaperJournal articleResearchpeer-review

  71. Published

    Endospores of thermophilic bacteria as tracers of microbial dispersal by ocean currents. / Müller, Albert Leopold; de Rezende, Júlia Rosa; Hubert, Casey R J; Kjeldsen, Kasper Urup; Lagkouvardos, Ilias; Berry, David; Jørgensen, Bo Barker; Loy, Alexander.

    In: I S M E Journal, Vol. 8, 2014, p. 1153–1165.

    Research output: Contribution to journal/Conference contribution in journal/Contribution to newspaperJournal articleResearchpeer-review

  72. Published

    Genome sequencing of a single cell of the widely distributed marine subsurface Dehalococcoidia, phylum Chloroflexi. / Wasmund, K; Schreiber, Lars; Lloyd, Karen; Petersen, Dorthe Groth; Schramm, Andreas; Stepanauskas, R; Jørgensen, Bo Barker; Adrian, L.

    In: I S M E Journal, Vol. 8, 2014, p. 383-397.

    Research output: Contribution to journal/Conference contribution in journal/Contribution to newspaperJournal articleResearchpeer-review

  73. Published

    Sulfidization of lacustrine glacial clay upon Holocene marine transgression (Arkona Basin, Baltic Sea). / Holmkvist, Lars; Kamyshny Jr., Alexey; Brüchert, Volker ; Ferdelman, Timothy G; Jørgensen, Bo Barker.

    In: Geochimica et Cosmochimica Acta, Vol. 142, 2014, p. 75-94.

    Research output: Contribution to journal/Conference contribution in journal/Contribution to newspaperJournal articleResearchpeer-review

  74. 2013
  75. Published

    How do natural, uncultivated microbes interact with organic matter? Insights from single cell genomics and metagenomics. / Lloyd, Karen; Bird, Jordan; Schreiber, Lars; Petersen, Dorthe Groth; Kjeldsen, Kasper Urup; Schramm, Andreas; Stepanauskas, Ramunas; Jørgensen, Bo Barker.

    2013. Abstract from 2013 AGU Fall Meeting, San Francisco, United States.

    Research output: Contribution to conferenceConference abstract for conferenceResearchpeer-review

  76. Published

    Potential sulfate reduction in deeply buried coalbeds 2 km below the seafloor off the Shimokita Peninsula (Japan). / Glombitza, Clemens; Inagaki, Fumio; Lever, Mark; Jørgensen, Bo Barker.

    2013. Abstract from AGU Fall Meeting, San Francisco, United States.

    Research output: Contribution to conferenceConference abstract for conferenceResearch

  77. Published

    Cyclic 100-ka (glacial-interglacial) migration of subseafloor redox zonation on the Peruvian shelf. / Contreras, S.; Meister, P.; Liu, B.; Prieto-Mollar, X.; Hinrichs, K.U.; Khalili, A.; Ferdelman, T.G.; Kuypers, M.M.M.; Jørgensen, B.B.

    In: Proceedings of the National Academy of Sciences of the United States of America, Vol. 110, No. 45, 05.11.2013, p. 18098-18103.

    Research output: Contribution to journal/Conference contribution in journal/Contribution to newspaperJournal articleResearchpeer-review

  78. Published

    Direct analysis of acetate and other volatile fatty acids in marine pore water by 2-dimensional ion chromatography-mass spectrometry (2D IC-MS) – A case study from Aarhus Bay (Denmark). / Glombitza, Clemens; Lever, Mark; Jørgensen, Bo Barker.

    2013. Abstract from International Meeting on Organic Geochemistry, Costa Adeje, Tenerife, Spain.

    Research output: Contribution to conferenceConference abstract for conferenceResearch

  79. Published

    Predominant archaea in marine sediments degrade detrital proteins. / Lloyd, Karen; Schreiber, L.; Petersen, Dorthe Groth; Kjeldsen, K.U.; Lever, M.A.; Steen, A.D.; Stepanauskas, R.; Richter, M.; Kleindienst, S.; Lenk, S.; Schramm, Andreas; Jorgensen, B.B.

    In: Nature, Vol. 496, No. 7444, 11.04.2013, p. 215-218.

    Research output: Contribution to journal/Conference contribution in journal/Contribution to newspaperJournal articleResearchpeer-review

  80. Published

    A letter from Denmark. / Jørgensen, Bo Barker; Kjær, Anders ; Knutz, Poul; Seidenkrantz, Marit-Solveig.

    In: ECORD Newsletter European Consortium for Ocean Research Drilling, No. 20, 04.2013, p. 18.

    Research output: Contribution to journal/Conference contribution in journal/Contribution to newspaperJournal articleResearch

  81. Published

    Microbial life under extreme energy limitation. / Hoehler, Tori M.; Jørgensen, Bo Barker.

    In: Nature Reviews. Microbiology, Vol. 11, 02.2013, p. 83-94.

    Research output: Contribution to journal/Conference contribution in journal/Contribution to newspaperJournal articleResearchpeer-review

  82. Published

    Abiotic racemization kinetics of amino acids in marine sediments. / Steen, Andrew; Jørgensen, Bo Barker; Lomstein, Bente Aagaard.

    In: P L o S One, Vol. 8, No. 8, 2013, p. e71648.

    Research output: Contribution to journal/Conference contribution in journal/Contribution to newspaperJournal articleResearchpeer-review

  83. Published

    Control of sulphate and methane distributions in marine sediments by organic matter reactivity. / Meister, Patrick; Liu, Bo; Ferdelman, Timothy G; Jørgensen, Bo Barker; Khalili, Arzhang.

    In: Geochimica et Cosmochimica Acta, Vol. 104, 2013, p. 183-193.

    Research output: Contribution to journal/Conference contribution in journal/Contribution to newspaperJournal articleResearchpeer-review

  84. Published

    Desulfoconvexum algidum gen. nov., sp. nov., a psychrophilic sulfate-reducing bacterium isolated from a permanently cold marine sediment. / Könneke, Martin; Kuever, Jan; Galushko, Alexander; Jørgensen, Bo Barker.

    In: International Journal of Systematic and Evolutionary Microbiology, Vol. 63, 2013, p. 959-964.

    Research output: Contribution to journal/Conference contribution in journal/Contribution to newspaperJournal articleResearchpeer-review

  85. Published

    Dispersal of thermophilic Desulfotomaculum endospores into Baltic Sea sediments over thousands of years. / Rezende, Julia Rosa de; Kjeldsen, Kasper Urup; Hubert, Casey RJ; Finster, Kai; Loy, Alexander; Jørgensen, Bo Barker.

    In: I S M E Journal, Vol. 7, 2013, p. 72-84.

    Research output: Contribution to journal/Conference contribution in journal/Contribution to newspaperJournal articleResearchpeer-review

  86. Published

    Effect of the aerenchymatous helophyte Glyceria maxima on the sulfate-reducing communities in two contrasting riparian grassland soils. / Miletto, M.; Bodelier, P.L.E.; Ferdelman, T.G.; Jørgensen, Bo Barker; Laanbroek, H.J.

    In: Plant and Soil, Vol. 370, 2013, p. 73-87.

    Research output: Contribution to journal/Conference contribution in journal/Contribution to newspaperJournal articleResearchpeer-review

  87. Published

    Methane cycling in shallow sediments and the overlying water column of the Baltic Sea: A synopsis of the project BALTIC GAS (BONUS+). / Rehder, Gregor; Conley, Daniel; Ferdelman, Timothy; Fossing, Henrik; Jensen, Jørn Bo; Klusek, Zygmunt ; Pimenov, Nikolay; Regnier, Pierre; Schlüter, Michael; Spiess, Volkard; Jørgensen, Bo Barker.

    2013. Abstract from 7th Study Conference on BALTEX, Borgholm, Oland, Sweden.

    Research output: Contribution to conferenceConference abstract for conferenceResearch

  88. Published

    Quantifying the degradation of organic matter in marine sediments: A review and synthesis. / Arndt, Sandra; Jørgensen, Bo Barker; LaRowe, D.E. ; Middelburg, J.J.; Pancost, R.D.; Regnier, P.

    In: Earth-Science Reviews, Vol. 123, 2013, p. 53-86.

    Research output: Contribution to journal/Conference contribution in journal/Contribution to newspaperJournal articleResearchpeer-review

  89. Published

    The Impact of Sediment and Carbon Fluxes on the Biogeochemistry of Methane and Sulfur in Littoral Baltic Sea Sediments (Himmerfjärden, Sweden). / Thang, N.M.; Brüchert, V.; Formolo, M.; Wegener, G.; Ginters, L.; Jørgensen, Bo Barker; Ferdelman, T.G.

    In: Estuaries and Coasts, Vol. 36, 2013, p. 98-115.

    Research output: Contribution to journal/Conference contribution in journal/Contribution to newspaperJournal articleResearchpeer-review

  90. 2012
  91. Published

    På jagt efter viden om havbundens ukendte liv. / Jørgensen, Bo Barker; Toftdal, Camilla Nissen.

    In: Biozoom, Vol. 2012, No. 3, 01.12.2012, p. 12-14.

    Research output: Contribution to journal/Conference contribution in journal/Contribution to newspaperJournal articleCommunication

  92. Published

    Verdens største bakterier. / Jørgensen, Bo Barker; Toftdal, Camilla Nissen.

    In: Aktuel Naturvidenskab, No. 6, 12.2012, p. 30-35.

    Research output: Contribution to journal/Conference contribution in journal/Contribution to newspaperJournal articleCommunication

  93. Published

    IODP Expedition 347: Paleoenvironmental evolution of the Baltic Sea Basin through the last glacial cycle. / Andrén, Thomas; Jørgensen, Bo Barker; Cotterill, Carol; Morgan, Sally.

    In: ECORD Newsletter European Consortium for Ocean Research Drilling, No. 19, 10.2012, p. 14,15,23.

    Research output: Contribution to journal/Conference contribution in journal/Contribution to newspaperJournal articleResearch

  94. Published

    Endospore abundance and D:L-amino acid modeling of bacterial turnover in holocene marine sediment (Aarhus Bay). / Langerhuus, Alice Thoft; Røy, Hans; Lever, Mark; Morono, Yuki; Inagaki, Fumio; Jørgensen, Bo Barker; Lomstein, Bente Aagaard.

    In: Geochimica et Cosmochimica Acta, Vol. 99, No. 2012, 13.09.2012, p. 87-99.

    Research output: Contribution to journal/Conference contribution in journal/Contribution to newspaperJournal articleResearchpeer-review

  95. Published

    High affinity sulfate reduction kinetics in marine sediment. / Tarpgaard, Irene Harder; Røy, Hans; Kjeldsen, Kasper Urup; Finster, Kai; Jørgensen, Bo Barker.

    2012. Abstract from ISME Conference 2012, København, Denmark.

    Research output: Contribution to conferenceConference abstract for conferenceResearchpeer-review

  96. Published

    Aerobic Microbial Respiration in 86-Million-Year-Old Deep-Sea Red Clay. / Røy, Hans; Kallmeyer, Jens; Adhikari, Rishi Ram; Pockalny, Robert ; Jørgensen, Bo Barker; D'Hondt, Steven .

    In: Science, Vol. 336, 18.05.2012, p. 922-925.

    Research output: Contribution to journal/Conference contribution in journal/Contribution to newspaperJournal articleResearchpeer-review

  97. Published

    Endospore abundance, microbial growth and necromass turnover in deep sub-seafloor sediment. / Lomstein, Bente Aagaard; Langerhuus, Alice Thoft; D'Hondt, Steven; Jørgensen, Bo Barker; Spivack, Arthur J.

    In: Nature, Vol. 484, 18.03.2012, p. 101-104.

    Research output: Contribution to journal/Conference contribution in journal/Contribution to newspaperJournal articleResearchpeer-review

  98. Published

    Bacteriogenic Fe(III) (Oxyhydr)oxides Characterized by Synchrotron Microprobe Coupled with Spatially Resolved Phylogenetic Analysis. / Mitsunobu, Satoshi ; Shiraishi, Fumito; Makita, Hiroko; Orcutt, Beth; Kikuchi, Sakiko; Jørgensen, Bo Barker; Takahashi, Yoshio.

    In: Environmental Science & Technology (Washington), Vol. 46, No. 6, 24.02.2012, p. 3304-3311.

    Research output: Contribution to journal/Conference contribution in journal/Contribution to newspaperJournal articleResearchpeer-review

  99. Published

    A single cell approach for revealing the phylogenetic identity of unknown sulfate-reducing microbes in a marine sediment. / Petersen, Dorthe Groth; Lloyd, Karen; Schreiber, Lars; Kjeldsen, Kasper Urup; Jørgensen, Bo Barker; Schramm, Andreas.

    2012. Abstract from 14th International Symposium on Microbial Ecology, Copenhagen, Denmark.

    Research output: Contribution to conferenceConference abstract for conferenceResearchpeer-review

  100. Published

    Estimating bacterial activity and turnover of vegetative cells, bacterial necromass and TOC in Aarhus Bay sediment. / Langerhuus, Alice Thoft; Røy, Hans; Lever, Mark; Inagaki, Fumio; Morono, Yuki; Jørgensen, Bo Barker; Lomstein, Bente Aagaard.

    2012. Poster session presented at MICROENERGY 2012 2nd International Workshop on Microbial Life under Extreme Energy Limitation, Aarhus , Denmark.

    Research output: Contribution to conferencePosterResearch

  101. Published

    Estimation of biogeochemical rates from concentration profiles: A novel inverse method. / Lettmann, K.A.; Riedinger, N.; Ramlau, R.; Knab, N.; Böttcher, M. E. ; Khalili, A.; Wollf, J.-O.; Jørgensen, Bo Barker.

    In: Estuarine, Coastal and Shelf Science, Vol. 100, 2012, p. 26-37.

    Research output: Contribution to journal/Conference contribution in journal/Contribution to newspaperJournal articleResearchpeer-review

  102. Published

    Insights into the ecological distributions and genomes of the enigmatic and widely distributed marine subsurface "Dehalococcoidetes" (phylum Chloroflexi). / Wasmund, Kenneth; Algora, Camelia; Cooper, Myriel; Schreiber, Lars; Lloyd, Karen; Petersen, Dorthe Groth; Reinhardt, Richard; Jørgensen, Bo Barker; Schramm, Andreas; Adrian, Lorenz.

    2012. Abstract from 14th International Symposium on Microbial Ecology, Copenhagen, Denmark.

    Research output: Contribution to conferenceConference abstract for conferenceResearchpeer-review

  103. Published

    Pinning down a metabolism for widespread, abundant, uncultured archaea through single cell genomic analysis. / Lloyd, Karen; Schreiber, Lars; Petersen, Dorthe Groth; Richter, Michael; Kjeldsen, Kasper Urup; Lever, Mark; Kleindienst, Sara; Schramm, Andreas; Jørgensen, Bo Barker.

    2012. Abstract from 14th International Symposium on Microbial Ecology, Copenhagen, Denmark.

    Research output: Contribution to conferenceConference abstract for conferenceResearchpeer-review

  104. Published

    Potential environmental functions of widespread, abundant, uncultured marine archaea. / Lloyd, Karen; Schreiber, Lars; Petersen, Dorthe Groth; Schramm, Andreas; Jørgensen, Bo Barker.

    2012.

    Research output: Contribution to conferenceConference abstract for conferenceResearchpeer-review

  105. Published

    Pre-column liquid chromatographic determination of dipicolinic acid from bacterial endospores. / Lomstein, Bente Aagaard; Jørgensen, Bo Barker.

    In: Limnology and Oceanography, Vol. 10, 2012, p. 227-233.

    Research output: Contribution to journal/Conference contribution in journal/Contribution to newspaperJournal articleResearchpeer-review

  106. Published

    Probing the genomic content of low-energy specialists. / Lloyd, Karen; Schreiber, Lars; Petersen, Dorthe Groth; Richter, Michael; Kjeldsen, Kasper Urup; Lever, Mark; Lenk, Sabine; Kleindienst, Sara; Schramm, Andreas; Jørgensen, Bo Barker.

    2012. Abstract from MICROENERGY 2012 2nd International Workshop on Microbial Life under Extreme Energy Limitation, Aarhus , Denmark.

    Research output: Contribution to conferenceConference abstract for conferenceResearchpeer-review

  107. Published

    Reconstructing genomes of uncultured microorganisms from marine sediments using single cell genomics - an Aarhus Bay, Denmark, case study. / Schreiber, Lars; Lloyd, Karen; Petersen, Dorthe Groth; Richter, Michael; Kjeldsen, Kasper Urup; Lever, Mark; Lenk, Sabine; Kleindienst, Sara ; Jørgensen, Bo Barker; Schramm, Andreas.

    2012. Abstract from 14th International Symposium on Microbial Ecology, Copenhagen, Denmark.

    Research output: Contribution to conferenceConference abstract for conferenceResearchpeer-review

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