Ditlev Egeskov Brodersen

Lektor

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Ditlev E. Brodersen

Lektor

  • Institut for Molekylærbiologi og Genetik - Strukturel Biologi
Postaddresse:
Gustav Wieds Vej 10
3130, 205
8000
Aarhus C
Danmark

E-mail: deb@mbg.au.dk

Mobil: +4521669001

Telefon: +4521669001

Ansættelser

2008-Lektor, Institut for Molekylærbiologi og Genetik, Aarhus Universitet
2003-2008Forskningslektor, Molekylærbiologisk Institut, Aarhus Universitet
1999-2003Post doc, MRC Laboratory of Molecular Biology, Cambridge, England

Uddannelse

2000Ph.d.-graden i molekylærbiologi
1997Cand. scient.-graden i kemi-bioteknologi
1995Bachelor-graden i kemi

Videnskabelige fokusområder

Strukturbiologi og røntgenkrystallografi
Biokemi og enzymologi
RNA-processering og -turnover i eukaryote celler
Bakterielle toxin-antitoxin komplekser
Regulering og aktivering af bakteriel stress respons
Udvikling af undervisningsmetoder på universitetsniveau

Udvalgte publikationer

48 peer-reviewed publikationer, 5483 citationer, H-index 23 (Scopus).

Bendtsen, K. L., Xu, K., Luckmann, M., Winther, K. S., Shah, S. A., Pedersen, C. N. S., and Brodersen, D. E. (2016) "Toxin inhibition in C. crescentus VapBC1 is mediated by a flexible pseudo- palindromic protein motif and modulated by DNA binding", Nucleic Acids Research, e-pub ahead of print.

Agerschou,, E. D., Christiansen, G., Schafer, N. P., Madsen, D. J., Brodersen, D. E., Semsey, S., and Otzen, D. (2016) “The transcriptional regulator GalR self-assembles to form highly regular tubular structures”, Scientific Reports, 6:27672.

Romans-Fuertes, P., Sondergaard, T. E., Sandmann, M. I., Wollenberg, R. D., Nielsen, K. F., Hansen, F. T., Giese, H., Brodersen, D. E., and Sørensen, J. L. (2016) “Identification of the non-ribosomal peptide synthetase responsible for biosynthesis of the potential anti-cancer drug sansalvamide in Fusarium solani”, Curr Genet., 62(4):799-807.

Xu, K., Dedic, E., and Brodersen, D. E. (2016) “Structural analysis of the active site architecture of the VapC toxin from Shigella flexneri”, Proteins, 84(7):892-899.

Sofos, N., Winkler, M. B., and Brodersen D. E. (2016) “RRM domain of human RBM7: purification, crystallization and structure determination”, Acta Crystallogr F Struct Biol Commun, 72(Pt 5):397-402.

Knudsen, M., Søndergaard, D., Tofting-Olesen, C., Hansen, F.,T., Brodersen, D. E., Pedersen, C. N. (2016) "Computational discovery of specificity-conferring sites in non-ribosomal peptide synthetases", Bioinformatics, 32(3):325-9.

Gytz, H., Mohr, D., Seweryn, P., Yoshimura, Y., Kutlubaeva, Z., Dolman, F., Chelchessa, B., Chetverin, A. B., Mulder, F. A. A., Brodersen, D. E. and Knudsen, C. R. (2015) " Structural basis for RNA-genome recognition during bacteriophage Qβ replication", Nucleic Acids Res, accepted.

Seweryn, P., Van, L. B., Kjeldgaard, M., Russo, C. J., Passmore, L. A., Hove-Jensen, B., Jochimsen, B., Brodersen, D. E. (2015) "Structural insights into the bacterial carbon-phosphorus lyase machinery", Nature, 525(7567): 68-72.

Poulsen, J. B., Agerschou, E. D., Sanderson, L. E., Van, L. B., Boesen, T., and Brodersen, D. E. (2014) "Structural characterization and positioning of subunits in the THO complex by small-angle X-ray scattering (SAXS)", PLoS One, 9(7): e103470.

Winther, K. S., Brodersen, D. E., Brown, A. K., Gerdes, K. (2013), "VapC of Mycobacterium tuberculosis Inhibits Translation by Endonucleolytic Cleavage of the Sarcin-Ricin Loop of 23S rRNA", Nature Commun, 4: 2796.

Bøggild, A. Sofos, N., Andersen, K. R., Feddersen, A., Easter, A. D., Passmore, L., and Brodersen, D. E. (2012), “The Crystal Structure of the Intact E. coli RelBE Toxin-Antitoxin Complex Provides the Structural Basis for Conditional Cooperativity”, Structure, 20(10):1641-8.

Neubauer, C., Gao, Y., Andersen, K. R., Dunham, C. D., Kelley, A. C., Hentschel, J., Gerdes, K., Ramakrishnan, V., and Brodersen, D. E. (2009) ” The structural basis for mRNA recognition and cleavage by the ribosome-dependent endonuclease RelE”, Cell, 139(6): 1084-1095.

Jonstrup, A. T., Andersen, K. R., Van, L. B., Brodersen, D. E. (2007) “The 1.4 Å crystal structure of the S. pombe Pop2p deadenylase subunit unveils the configuration of an active enzyme”, Nucleic Acids Res., 35: 3153-3164.

Midtgaard, S. F., Assenholt, J., Jonstrup, A. T., Van, L. B., Jensen, T. H., Brodersen, D. E. (2006) “Structure of the nuclear exosome component Rrp6p reveals an interplay between the active site and the HRDC domain”, Proc Natl Acad Sci USA, 103(32):11898-903.

Brodersen, D. E., Clemons Jr., W. M., Carter, A. P., Wimberly, B. T., and Ramakrishnan, V. (2002) “Crystal Structure of the 30S Ribosomal Subunit from Thermus thermophilus: Structure of the Proteins and Their Interactions with 16S RNA”, J. Mol. Biol., 316(3):725-768.

Ogle, J. M., Brodersen, D. E., Clemons Jr., W. M., Tarry, M. J., Carter, A. P., and Ramakrishnan, V. (2001) “Recognition of Cognate Transfer RNA by the 30S Ribosomal Subunit”, Science, 292: 897-902.

Brodersen, D. E., Clemons Jr., W. M., Carter, A. P., Morgan-Warren, R. J., Wimberly, B. T., and Ramakrishnan, V. (2000) “The Structural Basis for the Action of the Antibiotics Tetracycline, Pactamycin, and Hygromycin B on the 30S Ribosomal Subunit”, Cell, 103: 1143-1154.

Carter, A. P.*, Clemons Jr., W. M.*, Brodersen, D. E.*, Morgan-Warren, R. J.*, Wimberly, B. T., and Ramakrishnan, V. (2000) “Functional insights from the structure of the 30S ribosomal subunit and its interactions with antibiotics”, Nature, 407: 340-348.

Wimberly, B. T.*, Brodersen, D. E.*, Clemons Jr., W. M.*, Morgan-Warren, R. J.*, Carter, A. P.*, Vonrhein, C., Hartsch, T., and Ramakrishnan, V. (2000) “Structure of the 30S ribosomal subunit”, Nature, 407: 327-339.

Brodersen, D. E., Etzerodt, M., Madsen, P., Thøgersen, H. C., Celis, J. E., Nyborg, J., and Kjeldgaard, M. (1998) “EF-hands at atomic resolution: The structure of human psoriasin (S100A7) solved by MAD phasing”, Structure, 6: 477-489.

Medlemsskaber og tillidshverv

Medlem af bestyrelsen for Biokemisk Forening, 2007-2010.
Medlem af "The RNA Society", 2008-.
Medlem af "The American Society for Biochemistry and Molecular Biology", 2016-
Bedømmer for det franske nationale forskningsråd, ANR, 2011-.
Bedømmer for det tjekkiske nationale forskningsråd, GACR, 2016-.

Nylige videnskabelige præsentationer

CEA, Grenoble, 2016, invited speaker.
Lund University, Sweden, 2015, CMPS mini symposium, invited speaker.
Karolinska Instituttet, Sweden, 2014, invited speaker.
Uppsala University, Sweden, 2013, invited speaker.
Lund University, Sweden, 2015, CMPS mini symposium, inviteret foredragsholder.
Karolinska Instituttet, Sweden, 2014, inviteret foredragsholder.
Uppsala University, Sweden, 2013, inviteret foredragsholder.
Central European Institute of Technology, Masaryk Universitet, Brno, Tjekkiet, 2011, inviteret foredragsholder.
Annual Meeting of the Danish Microbiological Society, København, 2010, inviteret foredragsholder.
Institute for Cell and Molecular Biosciences Medical School, Newcastle University, 2010, inviteret fordragsholder.
Copenhagen Biocenter, Københavns Universitet, 2010, inviteret foredragsholder.
Nordic Research Training Course on the Application of X-ray Synchrotron Radiation in Chemistry, Physics, and Biology, Sandbjerg Gods, 2009, inviteret forelæser.
Universitá degli studi di Parma, Italien, 2008, inviteret fordragsholder.
Nucleic Acid Chemical Biology Symposium, Syddansk Universitet, 2007, inviteret fordragsholder.

Finansiering

Centerleder, AU Ideas/AUFF pilotcenter, Nanoripes – Centre for Natural Non-Ribosomal Peptide Synthesis, 5 mio. kr, 2012-2014.
Partner i Danmarks Grundforskningsfonds center "mRNP biogenesis and metabolism”, 2005-2015.
Modtager af Novo Nordisk Fondens Seniorforskerstipendium, 5 mio. kr., 2003-2008.

Forskningsformidling

Interview til Radioavisen på P1, Danmarks Radio, 4.2.2011.
Interview til Videnskabens Verden, P1, Danmarks Radio, 8.5.2010.
Interview til Radioavisen, P4 Østjylland, Danmarks Radio, 14.12.2009.
”Århusianske forskere på vej med fremtidens antibiotika”, DR Nyheder Online, 14.12.2009.
”3D-billeder af cellegift giver håb om ny antibiotika”, Videnskab.dk, 14.12.2009.
”Fremtidens antibiotika er små sakse”, Politiken Viden, 13.12.2009.
”Århus er også med, når Nobelprisen i kemi overrækkes”, Århus Stiftstidende, 10.12.2009.
”Århus-forskere hjalp med til Nobelpris”, Århus Stiftstidende, 16.10.2009.
”Nobelaura over Århus-forskere”, Campus, 12.10.2009.
”Stort dansk bidrag til Nobelpris”, Politiken, 7.10.2009.
”Danskere bag Nobelpris i kemi”, Videnskab.dk, 7.10.2009.

Patenter og priser

Human Frontier Science Program (HFSP) Career Development Award $180.000, 2003-2006.
Human Frontier Science Program (HFSP) long term postdoctoral fellowship, 2000-2003.
EMBO long term postdoctoral fellow, 1999-2000.
“Crystal structure of the 30s ribosome”, U. S. patent no. 6925394.
“Crystal structure of antibiotics bound to the 30S ribosome and its use”, U. S. patent no. 7079956.